Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4244

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,159,832	-		GFF4243	0.78	-2.6
1,159,909	+		GFF4243	0.81	-0.7
1,160,389	+				-0.6
1,160,390	-				-0.3
1,160,390	-				-0.7
1,161,330	+		GFF4244	0.62	-0.3
1,161,330	+		GFF4244	0.62	+0.7
1,161,330	+		GFF4244	0.62	-3.0
1,161,330	+		GFF4244	0.62	-0.1
1,161,330	+		GFF4244	0.62	-0.0
1,161,330	+		GFF4244	0.62	+0.2
1,161,330	+		GFF4244	0.62	-0.6
1,161,330	+		GFF4244	0.62	-0.2
1,161,330	+		GFF4244	0.62	-0.7
1,161,330	+		GFF4244	0.62	+0.5
1,161,330	+		GFF4244	0.62	+0.2
1,161,330	+		GFF4244	0.62	+0.4
1,161,330	+		GFF4244	0.62	-0.6
1,161,330	+		GFF4244	0.62	+0.0
1,161,330	+		GFF4244	0.62	-0.5
1,161,330	+		GFF4244	0.62	+0.1
1,161,330	+		GFF4244	0.62	+0.6
1,161,330	+		GFF4244	0.62	-0.6
1,161,331	-		GFF4244	0.62	-0.4
1,161,331	-		GFF4244	0.62	-0.4
1,161,331	-		GFF4244	0.62	-0.3
1,161,331	-		GFF4244	0.62	-0.5
1,161,331	-		GFF4244	0.62	-0.1
1,161,331	-		GFF4244	0.62	-0.2
1,161,331	-		GFF4244	0.62	+0.1
1,161,331	-		GFF4244	0.62	+0.1
1,161,331	-		GFF4244	0.62	-1.8
1,161,331	-		GFF4244	0.62	-0.3
1,161,331	-		GFF4244	0.62	-0.3
1,161,331	-		GFF4244	0.62	+0.2
1,161,331	-		GFF4244	0.62	-0.9
1,161,331	-		GFF4244	0.62	+0.2
1,161,504	+		GFF4244	0.76	-0.8
1,161,741	+				-0.7
1,161,742	-				-0.9
1,161,742	-				-0.3
1,161,742	-				+1.1
1,161,968	+		GFF4245	0.46	+0.7
1,161,968	+		GFF4245	0.46	-0.6
1,161,969	-		GFF4245	0.47	-0.7
1,161,969	-		GFF4245	0.47	-0.8
1,161,969	-		GFF4245	0.47	+0.5
1,161,969	-		GFF4245	0.47	-0.4
1,161,969	-		GFF4245	0.47	+0.3
1,161,969	-		GFF4245	0.47	-0.0
1,162,013	+		GFF4245	0.60	-0.1
1,162,013	+		GFF4245	0.60	+0.9
1,162,013	+		GFF4245	0.60	-0.6
1,162,014	-		GFF4245	0.60	-0.5
1,162,014	-		GFF4245	0.60	-2.0
1,162,014	-		GFF4245	0.60	-0.1
1,162,014	-		GFF4245	0.60	+0.0
1,162,014	-		GFF4245	0.60	+1.4
1,162,028	+		GFF4245	0.64	-0.2
1,162,029	-		GFF4245	0.65	-0.1
1,162,029	-		GFF4245	0.65	+0.3
1,162,189	-				-0.5
1,162,189	-				-0.0
1,162,189	-				+0.7
1,162,189	-				+0.7
1,162,335	+		GFF4246	0.50	+0.1
1,162,335	+		GFF4246	0.50	-0.1
1,162,335	+		GFF4246	0.50	+0.2
1,162,335	+		GFF4246	0.50	+0.2
1,162,335	+		GFF4246	0.50	-0.1
1,162,335	+		GFF4246	0.50	-0.3
1,162,336	-		GFF4246	0.51	-0.7
1,162,336	-		GFF4246	0.51	-0.1
1,162,336	-		GFF4246	0.51	+0.5
1,162,461	+		GFF4246	0.86	+0.7
1,162,461	+		GFF4246	0.86	+1.0
1,162,461	+		GFF4246	0.86	+0.3
1,162,461	+		GFF4246	0.86	-1.4
1,162,461	+		GFF4246	0.86	-1.0
1,162,461	+		GFF4246	0.86	+0.2
1,162,461	+		GFF4246	0.86	+0.9
1,162,461	+		GFF4246	0.86	-0.1
1,162,461	+		GFF4246	0.86	-0.4
1,162,461	+		GFF4246	0.86	-0.3
1,162,461	+		GFF4246	0.86	+0.1
1,162,461	+		GFF4246	0.86	-0.5
1,162,462	-		GFF4246	0.86	-0.3
1,162,462	-		GFF4246	0.86	+0.4
1,162,462	-		GFF4246	0.86	+0.3
1,162,462	-		GFF4246	0.86	+0.1
1,162,462	-		GFF4246	0.86	-0.2
1,162,462	-		GFF4246	0.86	-0.3
1,162,462	-		GFF4246	0.86	-0.7
1,162,462	-		GFF4246	0.86	+0.0
1,162,462	-		GFF4246	0.86	+0.3
1,162,462	-		GFF4246	0.86	-0.2
1,162,462	-		GFF4246	0.86	+0.2
1,162,462	-		GFF4246	0.86	+1.4
1,162,462	-		GFF4246	0.86	-0.3
1,162,462	-		GFF4246	0.86	-0.4
1,162,462	-		GFF4246	0.86	-1.1
1,162,463	-		GFF4246	0.86	-0.2
1,162,606	+				-0.0
1,162,607	-				-0.4
1,162,607	-				+1.5
1,162,614	-				+0.5
1,162,644	+				-0.8
1,162,644	+				+0.0
1,162,645	-				-2.0
1,162,645	-				-0.7
1,162,758	+				+0.1
1,162,758	+				-0.4
1,162,758	+				-0.4
1,162,758	+				-0.2
1,162,758	+				-0.0
1,162,758	+				-2.6
1,162,758	+				-0.0
1,162,759	-				+0.2
1,162,759	-				-1.4
1,162,759	-				+0.7
1,162,759	-				-0.3
1,162,759	-				-0.1
1,162,759	-				-0.6
1,162,759	-				+1.2