Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4097

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,006,117	-		GFF4095	0.17	+1.2
1,006,368	-				+0.1
1,006,390	+				+0.1
1,006,391	-				+0.9
1,006,414	+				+0.9
1,006,415	-				+0.0
1,006,415	-				+0.6
1,006,415	-				+0.1
1,006,475	-		GFF4096	0.11	+1.0
1,006,555	+		GFF4096	0.24	-0.3
1,006,555	+		GFF4096	0.24	+1.0
1,006,555	+		GFF4096	0.24	+0.5
1,006,945	+		GFF4096	0.87	+1.1
1,007,045	+				+0.0
1,007,048	+				-0.6
1,007,048	+				+0.4
1,007,048	+				-0.5
1,007,049	-				+0.2
1,007,049	-				+0.1
1,007,049	-				-0.4
1,007,183	+				-0.5
1,007,219	+				-0.3
1,007,219	+				+0.1
1,007,219	+				+1.9
1,007,219	+				-1.2
1,007,220	-				+0.4
1,007,220	-				-0.3
1,007,567	+		GFF4097	0.36	-0.1
1,007,567	+		GFF4097	0.36	-1.0
1,007,567	+		GFF4097	0.36	-1.6
1,007,567	+		GFF4097	0.36	-1.0
1,007,568	-		GFF4097	0.37	-0.1
1,007,568	-		GFF4097	0.37	-0.4
1,007,606	+		GFF4097	0.39	-0.2
1,007,606	+		GFF4097	0.39	-0.6
1,007,607	-		GFF4097	0.40	+1.3
1,007,607	-		GFF4097	0.40	-0.6
1,007,607	-		GFF4097	0.40	-0.7
1,007,607	-		GFF4097	0.40	+0.1
1,007,855	+		GFF4097	0.59	-1.6
1,007,856	-		GFF4097	0.59	+0.3
1,007,856	-		GFF4097	0.59	-0.4
1,007,898	-		GFF4097	0.62	-0.9
1,007,898	-		GFF4097	0.62	-0.4
1,007,993	+		GFF4097	0.69	+0.1
1,007,993	+		GFF4097	0.69	-0.2
1,008,076	+		GFF4097	0.76	-0.3
1,008,077	-		GFF4097	0.76	-0.6
1,008,077	-		GFF4097	0.76	+0.6
1,008,077	-		GFF4097	0.76	-0.9
1,008,102	-		GFF4097	0.78	-0.2
1,008,102	-		GFF4097	0.78	-0.1
1,008,254	+		GFF4097	0.89	-0.4
1,008,254	+		GFF4097	0.89	+0.3
1,008,255	-		GFF4097	0.89	+0.5
1,008,255	-		GFF4097	0.89	+0.1
1,008,390	-				-0.0
1,008,611	+		GFF4098	0.28	-0.3
1,008,611	+		GFF4098	0.28	-1.7
1,008,612	-		GFF4098	0.28	-1.0
1,008,683	+		GFF4098	0.38	-0.7
1,008,683	+		GFF4098	0.38	+0.6
1,008,684	-		GFF4098	0.38	+0.2
1,009,324	+				-0.6
1,009,324	+				+0.0
1,009,325	-				-0.8
1,009,325	-				+0.5
1,009,325	-				+0.2