Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4002

Experiment: Ying_OrganicAcid7 rep A; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4000 and GFF4001 overlap by 4 nucleotidesGFF4001 and GFF4002 are separated by 16 nucleotidesGFF4002 and GFF4003 are separated by 113 nucleotidesGFF4003 and GFF4004 are separated by 16 nucleotides GFF4000 - Cobalamin synthase, at 916,433 to 917,245 GFF4000 GFF4001 - Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73), at 917,242 to 917,796 GFF4001 GFF4002 - Periplasmic binding protein-related protein, at 917,813 to 918,625 GFF4002 GFF4003 - Endonuclease III (EC 4.2.99.18), at 918,739 to 919,377 GFF4003 GFF4004 - LysR family regulatory protein, at 919,394 to 920,338 GFF4004 Position (kb) 917 918 919Strain fitness (log2 ratio) -1 0 1at 917.207 kb on + strandat 917.208 kb on - strandat 917.296 kb on + strandat 917.608 kb on + strand, within GFF4001at 917.609 kb on - strand, within GFF4001at 917.995 kb on - strand, within GFF4002at 917.995 kb on - strand, within GFF4002at 918.063 kb on + strand, within GFF4002at 918.064 kb on - strand, within GFF4002at 918.105 kb on + strand, within GFF4002at 918.105 kb on + strand, within GFF4002at 918.105 kb on + strand, within GFF4002at 918.105 kb on + strand, within GFF4002at 918.204 kb on + strand, within GFF4002at 918.204 kb on + strand, within GFF4002at 918.204 kb on + strand, within GFF4002at 918.204 kb on + strand, within GFF4002at 918.204 kb on + strand, within GFF4002at 918.204 kb on + strand, within GFF4002at 918.205 kb on - strand, within GFF4002at 918.205 kb on - strand, within GFF4002at 918.321 kb on + strand, within GFF4002at 918.322 kb on - strand, within GFF4002at 918.322 kb on - strand, within GFF4002at 918.333 kb on + strand, within GFF4002at 918.333 kb on + strand, within GFF4002at 918.334 kb on - strand, within GFF4002at 918.492 kb on + strand, within GFF4002at 918.492 kb on + strand, within GFF4002at 918.658 kb on + strandat 918.659 kb on - strandat 918.659 kb on - strandat 918.659 kb on - strandat 918.659 kb on - strandat 918.824 kb on + strand, within GFF4003at 918.824 kb on + strand, within GFF4003at 918.824 kb on + strand, within GFF4003at 918.825 kb on - strand, within GFF4003at 918.825 kb on - strand, within GFF4003at 918.866 kb on + strand, within GFF4003at 919.134 kb on - strand, within GFF4003at 919.155 kb on - strand, within GFF4003at 919.155 kb on - strand, within GFF4003at 919.155 kb on - strand, within GFF4003at 919.155 kb on - strand, within GFF4003at 919.479 kb on + strandat 919.480 kb on - strandat 919.480 kb on - strandat 919.480 kb on - strandat 919.618 kb on - strand, within GFF4004at 919.618 kb on - strand, within GFF4004

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1
remove
917,207 + -0.5
917,208 - +0.1
917,296 + -0.2
917,608 + GFF4001 0.66 -0.3
917,609 - GFF4001 0.66 -1.0
917,995 - GFF4002 0.22 +0.3
917,995 - GFF4002 0.22 +0.2
918,063 + GFF4002 0.31 -0.7
918,064 - GFF4002 0.31 -0.1
918,105 + GFF4002 0.36 +0.0
918,105 + GFF4002 0.36 -0.6
918,105 + GFF4002 0.36 -0.3
918,105 + GFF4002 0.36 +0.1
918,204 + GFF4002 0.48 -1.7
918,204 + GFF4002 0.48 -0.1
918,204 + GFF4002 0.48 +1.0
918,204 + GFF4002 0.48 +0.0
918,204 + GFF4002 0.48 +0.6
918,204 + GFF4002 0.48 -0.3
918,205 - GFF4002 0.48 -0.5
918,205 - GFF4002 0.48 -0.5
918,321 + GFF4002 0.62 -1.1
918,322 - GFF4002 0.63 -0.4
918,322 - GFF4002 0.63 -1.0
918,333 + GFF4002 0.64 -0.3
918,333 + GFF4002 0.64 +0.3
918,334 - GFF4002 0.64 +1.3
918,492 + GFF4002 0.84 +1.0
918,492 + GFF4002 0.84 +0.6
918,658 + +0.2
918,659 - -0.0
918,659 - +0.2
918,659 - +0.9
918,659 - -0.2
918,824 + GFF4003 0.13 -0.2
918,824 + GFF4003 0.13 +1.3
918,824 + GFF4003 0.13 -1.6
918,825 - GFF4003 0.13 -0.8
918,825 - GFF4003 0.13 -0.1
918,866 + GFF4003 0.20 -0.8
919,134 - GFF4003 0.62 +0.0
919,155 - GFF4003 0.65 -0.8
919,155 - GFF4003 0.65 -1.3
919,155 - GFF4003 0.65 +0.3
919,155 - GFF4003 0.65 +0.6
919,479 + -0.1
919,480 - -0.4
919,480 - -0.7
919,480 - -0.3
919,618 - GFF4004 0.24 +0.5
919,618 - GFF4004 0.24 +1.6

Or see this region's nucleotide sequence