Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3814

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
717,856	-				-0.6
717,857	+				-1.4
717,857	+				+0.1
717,858	-				-0.1
717,858	-				+1.9
718,037	+		GFF3814	0.62	+0.2
718,037	+		GFF3814	0.62	-0.1
718,037	+		GFF3814	0.62	-1.1
718,037	+		GFF3814	0.62	-0.3
718,037	+		GFF3814	0.62	-0.4
718,037	+		GFF3814	0.62	-0.1
718,038	-		GFF3814	0.63	-2.0
718,038	-		GFF3814	0.63	-1.3
718,038	-		GFF3814	0.63	-0.2
718,119	-				-0.0
718,119	-				-0.6
718,129	-				+0.6
718,129	-				-0.7
718,129	-				+0.1
718,331	+				+0.7
718,331	+				-0.2
718,332	-				-0.2
718,377	+				-0.5
718,377	+				-0.3
718,377	+				+0.1
718,378	-				+0.7
718,378	-				-0.5
718,605	-		GFF3815	0.12	+0.9
718,605	-		GFF3815	0.12	-0.1
719,055	-		GFF3815	0.37	-0.0
719,055	-		GFF3815	0.37	-0.7