Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3802 and GFF3803 are separated by 1 nucleotides GFF3803 and GFF3804 are separated by 1 nucleotides GFF3804 and GFF3805 are separated by 4 nucleotides GFF3805 and GFF3806 are separated by 89 nucleotides
GFF3802 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 701,231 to 702,097
GFF3802
GFF3803 - 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase, at 702,099 to 703,058
GFF3803
GFF3804 - Chromosome segregation ATPases-like protein, at 703,060 to 703,734
GFF3804
GFF3805 - Mll7338 protein, at 703,739 to 704,563
GFF3805
GFF3806 - S-adenosylmethionine:2-demethylmenaquinone methyltransferase (EC 2.1.-.-), at 704,653 to 705,618
GFF3806
Position (kb) 703
704 Strain fitness (log2 ratio) -2
-1
0
1
2 at 702.098 kb on + strand at 702.099 kb on - strand at 702.099 kb on - strand at 702.099 kb on - strand at 702.244 kb on - strand, within GFF3803 at 702.498 kb on + strand, within GFF3803 at 702.499 kb on - strand, within GFF3803 at 702.499 kb on - strand, within GFF3803 at 702.558 kb on + strand, within GFF3803 at 702.559 kb on - strand, within GFF3803 at 702.819 kb on + strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.849 kb on + strand, within GFF3803 at 702.849 kb on + strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.862 kb on - strand, within GFF3803 at 703.014 kb on + strand at 703.105 kb on + strand at 703.105 kb on + strand at 703.105 kb on + strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.199 kb on - strand, within GFF3804 at 703.255 kb on + strand, within GFF3804 at 703.381 kb on + strand, within GFF3804 at 703.382 kb on - strand, within GFF3804 at 703.441 kb on + strand, within GFF3804 at 703.624 kb on + strand, within GFF3804 at 703.625 kb on - strand, within GFF3804 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.869 kb on + strand, within GFF3805 at 703.870 kb on - strand, within GFF3805 at 703.870 kb on - strand, within GFF3805 at 703.894 kb on - strand, within GFF3805 at 703.920 kb on + strand, within GFF3805 at 703.920 kb on + strand, within GFF3805 at 703.920 kb on + strand, within GFF3805 at 703.921 kb on - strand, within GFF3805 at 703.921 kb on - strand, within GFF3805 at 703.921 kb on - strand, within GFF3805 at 703.950 kb on + strand, within GFF3805 at 704.334 kb on + strand, within GFF3805 at 704.334 kb on + strand, within GFF3805 at 704.334 kb on + strand, within GFF3805 at 704.335 kb on - strand, within GFF3805 at 704.340 kb on + strand, within GFF3805 at 704.340 kb on + strand, within GFF3805 at 704.341 kb on - strand, within GFF3805 at 704.355 kb on + strand, within GFF3805 at 704.356 kb on - strand, within GFF3805 at 704.362 kb on - strand, within GFF3805 at 704.541 kb on + strand at 704.541 kb on + strand at 704.541 kb on + strand at 704.542 kb on - strand at 704.542 kb on - strand at 704.544 kb on + strand at 704.544 kb on + strand at 704.545 kb on - strand at 704.621 kb on + strand at 704.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 702,098 + -1.5 702,099 - -0.6 702,099 - +0.7 702,099 - -0.3 702,244 - GFF3803 0.15 +0.4 702,498 + GFF3803 0.42 -0.3 702,499 - GFF3803 0.42 +0.6 702,499 - GFF3803 0.42 -0.9 702,558 + GFF3803 0.48 -0.7 702,559 - GFF3803 0.48 -0.0 702,819 + GFF3803 0.75 -0.0 702,820 - GFF3803 0.75 -0.2 702,820 - GFF3803 0.75 +0.4 702,820 - GFF3803 0.75 +0.2 702,820 - GFF3803 0.75 +0.5 702,849 + GFF3803 0.78 -1.9 702,849 + GFF3803 0.78 -0.4 702,850 - GFF3803 0.78 +1.0 702,850 - GFF3803 0.78 -0.5 702,850 - GFF3803 0.78 +0.6 702,850 - GFF3803 0.78 -0.7 702,862 - GFF3803 0.79 -0.3 703,014 + -1.7 703,105 + -0.7 703,105 + +0.2 703,105 + +0.3 703,106 - +0.3 703,106 - -2.2 703,106 - -0.5 703,106 - -1.3 703,106 - -1.2 703,106 - +0.3 703,106 - +0.6 703,199 - GFF3804 0.21 +1.6 703,255 + GFF3804 0.29 -0.0 703,381 + GFF3804 0.48 -0.3 703,382 - GFF3804 0.48 -0.2 703,441 + GFF3804 0.56 +0.9 703,624 + GFF3804 0.84 +0.1 703,625 - GFF3804 0.84 +0.3 703,833 + GFF3805 0.11 +0.6 703,833 + GFF3805 0.11 +0.2 703,833 + GFF3805 0.11 -0.0 703,833 + GFF3805 0.11 -0.4 703,833 + GFF3805 0.11 +0.2 703,833 + GFF3805 0.11 +2.6 703,833 + GFF3805 0.11 -0.3 703,833 + GFF3805 0.11 +0.6 703,833 + GFF3805 0.11 +0.6 703,834 - GFF3805 0.12 -0.7 703,834 - GFF3805 0.12 -1.2 703,834 - GFF3805 0.12 +0.4 703,834 - GFF3805 0.12 +0.9 703,834 - GFF3805 0.12 -0.1 703,834 - GFF3805 0.12 -2.5 703,834 - GFF3805 0.12 +0.4 703,834 - GFF3805 0.12 +0.3 703,834 - GFF3805 0.12 -0.7 703,869 + GFF3805 0.16 -0.2 703,870 - GFF3805 0.16 +0.7 703,870 - GFF3805 0.16 -0.4 703,894 - GFF3805 0.19 -0.1 703,920 + GFF3805 0.22 +0.2 703,920 + GFF3805 0.22 +0.0 703,920 + GFF3805 0.22 +0.6 703,921 - GFF3805 0.22 -0.7 703,921 - GFF3805 0.22 +0.1 703,921 - GFF3805 0.22 +1.0 703,950 + GFF3805 0.26 +0.4 704,334 + GFF3805 0.72 +1.6 704,334 + GFF3805 0.72 -0.1 704,334 + GFF3805 0.72 -0.3 704,335 - GFF3805 0.72 -1.2 704,340 + GFF3805 0.73 -0.5 704,340 + GFF3805 0.73 +0.7 704,341 - GFF3805 0.73 +1.6 704,355 + GFF3805 0.75 -2.2 704,356 - GFF3805 0.75 +0.1 704,362 - GFF3805 0.76 -0.0 704,541 + +0.3 704,541 + +0.2 704,541 + -1.3 704,542 - +0.2 704,542 - -0.5 704,544 + -1.0 704,544 + +0.4 704,545 - +1.3 704,621 + +0.3 704,622 - -1.0
Or see this region's nucleotide sequence