Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3762 and GFF3763 are separated by 72 nucleotides GFF3763 and GFF3764 are separated by 28 nucleotides GFF3764 and GFF3765 are separated by 148 nucleotides
GFF3762 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 655,839 to 657,065
GFF3762
GFF3763 - hypothetical protein, at 657,138 to 657,812
GFF3763
GFF3764 - inversin protein alternative isoform, putative, at 657,841 to 662,424
GFF3764
GFF3765 - Metal transporter, ZIP family, at 662,573 to 663,565
GFF3765
Position (kb) 657
658
659
660
661
662
663 Strain fitness (log2 ratio) -2
-1
0
1 at 656.879 kb on - strand, within GFF3762 at 657.277 kb on + strand, within GFF3763 at 657.278 kb on - strand, within GFF3763 at 657.421 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.497 kb on - strand, within GFF3763 at 657.497 kb on - strand, within GFF3763 at 657.580 kb on + strand, within GFF3763 at 657.608 kb on - strand, within GFF3763 at 657.608 kb on - strand, within GFF3763 at 657.671 kb on - strand, within GFF3763 at 657.674 kb on - strand, within GFF3763 at 657.674 kb on - strand, within GFF3763 at 657.674 kb on - strand, within GFF3763 at 658.740 kb on - strand, within GFF3764 at 658.741 kb on - strand, within GFF3764 at 659.010 kb on - strand, within GFF3764 at 659.225 kb on + strand, within GFF3764 at 659.348 kb on + strand, within GFF3764 at 659.348 kb on + strand, within GFF3764 at 659.348 kb on + strand, within GFF3764 at 659.349 kb on - strand, within GFF3764 at 659.349 kb on - strand, within GFF3764 at 659.369 kb on + strand, within GFF3764 at 659.369 kb on + strand, within GFF3764 at 659.370 kb on - strand, within GFF3764 at 659.370 kb on - strand, within GFF3764 at 659.370 kb on - strand, within GFF3764 at 659.370 kb on - strand, within GFF3764 at 659.370 kb on - strand, within GFF3764 at 659.370 kb on - strand, within GFF3764 at 660.492 kb on - strand, within GFF3764 at 660.492 kb on - strand, within GFF3764 at 660.492 kb on - strand, within GFF3764 at 660.806 kb on + strand, within GFF3764 at 660.806 kb on + strand, within GFF3764 at 660.807 kb on - strand, within GFF3764 at 660.807 kb on - strand, within GFF3764 at 660.807 kb on - strand, within GFF3764 at 660.839 kb on + strand, within GFF3764 at 660.839 kb on + strand, within GFF3764 at 660.840 kb on - strand, within GFF3764 at 660.840 kb on - strand, within GFF3764 at 660.872 kb on + strand, within GFF3764 at 660.873 kb on - strand, within GFF3764 at 660.873 kb on - strand, within GFF3764 at 661.424 kb on + strand, within GFF3764 at 661.425 kb on - strand, within GFF3764 at 661.425 kb on - strand, within GFF3764 at 662.009 kb on + strand at 662.009 kb on + strand at 662.009 kb on + strand at 662.010 kb on - strand at 662.010 kb on - strand at 662.010 kb on - strand at 662.010 kb on - strand at 662.010 kb on - strand at 662.010 kb on - strand at 662.072 kb on + strand at 662.073 kb on - strand at 662.073 kb on - strand at 662.510 kb on + strand at 662.510 kb on + strand at 662.510 kb on + strand at 662.510 kb on + strand at 662.510 kb on + strand at 662.511 kb on - strand at 662.511 kb on - strand at 662.511 kb on - strand at 662.527 kb on + strand at 662.528 kb on - strand at 662.730 kb on + strand, within GFF3765 at 662.731 kb on - strand, within GFF3765 at 662.949 kb on + strand, within GFF3765 at 663.293 kb on + strand, within GFF3765
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 656,879 - GFF3762 0.85 +0.3 657,277 + GFF3763 0.21 -0.1 657,278 - GFF3763 0.21 -0.3 657,421 + GFF3763 0.42 -0.4 657,496 + GFF3763 0.53 -0.1 657,496 + GFF3763 0.53 -0.6 657,496 + GFF3763 0.53 -0.4 657,496 + GFF3763 0.53 -2.3 657,496 + GFF3763 0.53 +0.7 657,496 + GFF3763 0.53 -0.5 657,496 + GFF3763 0.53 -0.0 657,497 - GFF3763 0.53 -0.7 657,497 - GFF3763 0.53 +0.7 657,580 + GFF3763 0.65 +0.1 657,608 - GFF3763 0.70 -0.2 657,608 - GFF3763 0.70 -0.3 657,671 - GFF3763 0.79 -0.2 657,674 - GFF3763 0.79 -1.5 657,674 - GFF3763 0.79 -1.0 657,674 - GFF3763 0.79 +1.6 658,740 - GFF3764 0.20 +0.1 658,741 - GFF3764 0.20 -0.2 659,010 - GFF3764 0.26 +0.1 659,225 + GFF3764 0.30 +0.7 659,348 + GFF3764 0.33 +0.4 659,348 + GFF3764 0.33 -0.2 659,348 + GFF3764 0.33 +0.2 659,349 - GFF3764 0.33 -0.2 659,349 - GFF3764 0.33 -0.2 659,369 + GFF3764 0.33 -1.0 659,369 + GFF3764 0.33 -0.9 659,370 - GFF3764 0.33 -0.6 659,370 - GFF3764 0.33 -0.6 659,370 - GFF3764 0.33 +0.2 659,370 - GFF3764 0.33 +1.2 659,370 - GFF3764 0.33 +0.0 659,370 - GFF3764 0.33 +0.9 660,492 - GFF3764 0.58 -1.3 660,492 - GFF3764 0.58 +0.6 660,492 - GFF3764 0.58 +1.0 660,806 + GFF3764 0.65 +0.4 660,806 + GFF3764 0.65 +0.5 660,807 - GFF3764 0.65 +1.5 660,807 - GFF3764 0.65 +0.1 660,807 - GFF3764 0.65 +0.8 660,839 + GFF3764 0.65 -0.0 660,839 + GFF3764 0.65 -0.6 660,840 - GFF3764 0.65 +0.0 660,840 - GFF3764 0.65 -0.6 660,872 + GFF3764 0.66 +1.6 660,873 - GFF3764 0.66 +0.2 660,873 - GFF3764 0.66 -0.1 661,424 + GFF3764 0.78 +0.2 661,425 - GFF3764 0.78 -0.1 661,425 - GFF3764 0.78 +0.7 662,009 + +0.1 662,009 + +0.2 662,009 + +0.3 662,010 - +0.3 662,010 - -0.0 662,010 - +0.0 662,010 - +0.1 662,010 - -1.9 662,010 - +0.4 662,072 + -0.0 662,073 - -0.1 662,073 - -0.8 662,510 + +0.4 662,510 + +0.3 662,510 + -0.7 662,510 + -0.0 662,510 + +0.3 662,511 - -0.7 662,511 - -0.7 662,511 - +0.7 662,527 + -0.1 662,528 - +0.6 662,730 + GFF3765 0.16 +1.3 662,731 - GFF3765 0.16 +0.1 662,949 + GFF3765 0.38 -0.0 663,293 + GFF3765 0.73 +0.1
Or see this region's nucleotide sequence