Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3646 and GFF3647 are separated by 7 nucleotides GFF3647 and GFF3648 are separated by 124 nucleotides
GFF3646 - RNA polymerase sigma-54 factor RpoN, at 529,772 to 531,196
GFF3646
GFF3647 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 531,204 to 533,075
GFF3647
GFF3648 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 533,200 to 536,487
GFF3648
Position (kb) 531
532
533
534 Strain fitness (log2 ratio) -2
-1
0
1 at 530.654 kb on + strand, within GFF3646 at 530.654 kb on + strand, within GFF3646 at 530.655 kb on - strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.910 kb on - strand, within GFF3646 at 530.910 kb on - strand, within GFF3646 at 530.910 kb on - strand, within GFF3646 at 530.910 kb on - strand, within GFF3646 at 530.934 kb on - strand, within GFF3646 at 530.934 kb on - strand, within GFF3646 at 531.125 kb on + strand at 531.989 kb on - strand, within GFF3647 at 532.447 kb on + strand, within GFF3647 at 532.447 kb on + strand, within GFF3647 at 532.447 kb on + strand, within GFF3647 at 532.447 kb on + strand, within GFF3647 at 532.448 kb on - strand, within GFF3647 at 532.448 kb on - strand, within GFF3647 at 532.448 kb on - strand, within GFF3647 at 532.654 kb on + strand, within GFF3647 at 532.654 kb on + strand, within GFF3647 at 532.655 kb on - strand, within GFF3647 at 532.655 kb on - strand, within GFF3647 at 532.816 kb on + strand, within GFF3647 at 532.817 kb on - strand, within GFF3647 at 532.981 kb on + strand at 532.982 kb on - strand at 532.982 kb on - strand at 533.112 kb on + strand at 533.112 kb on + strand at 533.113 kb on - strand at 533.546 kb on + strand, within GFF3648 at 533.547 kb on - strand, within GFF3648 at 533.547 kb on - strand, within GFF3648 at 533.547 kb on - strand, within GFF3648 at 533.547 kb on - strand, within GFF3648 at 533.578 kb on + strand, within GFF3648 at 533.579 kb on - strand, within GFF3648 at 533.579 kb on - strand, within GFF3648 at 533.579 kb on - strand, within GFF3648 at 533.579 kb on - strand, within GFF3648 at 534.064 kb on + strand, within GFF3648 at 534.065 kb on - strand, within GFF3648 at 534.065 kb on - strand, within GFF3648 at 534.065 kb on - strand, within GFF3648
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 530,654 + GFF3646 0.62 +1.3 530,654 + GFF3646 0.62 +0.6 530,655 - GFF3646 0.62 +1.3 530,909 + GFF3646 0.80 -0.3 530,909 + GFF3646 0.80 -0.6 530,909 + GFF3646 0.80 -0.6 530,909 + GFF3646 0.80 +0.1 530,909 + GFF3646 0.80 -0.1 530,909 + GFF3646 0.80 -0.5 530,909 + GFF3646 0.80 -0.5 530,909 + GFF3646 0.80 +0.2 530,909 + GFF3646 0.80 -0.1 530,910 - GFF3646 0.80 +0.5 530,910 - GFF3646 0.80 -2.2 530,910 - GFF3646 0.80 +0.6 530,910 - GFF3646 0.80 -0.1 530,934 - GFF3646 0.82 -0.3 530,934 - GFF3646 0.82 +1.0 531,125 + +0.4 531,989 - GFF3647 0.42 +0.8 532,447 + GFF3647 0.66 -0.2 532,447 + GFF3647 0.66 -1.6 532,447 + GFF3647 0.66 -0.2 532,447 + GFF3647 0.66 +0.7 532,448 - GFF3647 0.66 +0.3 532,448 - GFF3647 0.66 +1.2 532,448 - GFF3647 0.66 -0.2 532,654 + GFF3647 0.77 -1.0 532,654 + GFF3647 0.77 +0.2 532,655 - GFF3647 0.78 -0.3 532,655 - GFF3647 0.78 -0.1 532,816 + GFF3647 0.86 -1.4 532,817 - GFF3647 0.86 -0.3 532,981 + -0.2 532,982 - +0.0 532,982 - -0.2 533,112 + +0.1 533,112 + +0.0 533,113 - -0.6 533,546 + GFF3648 0.11 -0.1 533,547 - GFF3648 0.11 +0.6 533,547 - GFF3648 0.11 -0.4 533,547 - GFF3648 0.11 -0.3 533,547 - GFF3648 0.11 +0.4 533,578 + GFF3648 0.11 +0.1 533,579 - GFF3648 0.12 +0.4 533,579 - GFF3648 0.12 -0.0 533,579 - GFF3648 0.12 -0.5 533,579 - GFF3648 0.12 -0.1 534,064 + GFF3648 0.26 -0.3 534,065 - GFF3648 0.26 -0.7 534,065 - GFF3648 0.26 -0.4 534,065 - GFF3648 0.26 -0.6
Or see this region's nucleotide sequence