Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3593 and GFF3594 are separated by 5 nucleotides GFF3594 and GFF3595 are separated by 35 nucleotides GFF3595 and GFF3596 are separated by 124 nucleotides
GFF3593 - Autolysin sensor kinase (EC 2.7.3.-), at 480,773 to 481,855
GFF3593
GFF3594 - hypothetical protein, at 481,861 to 482,151
GFF3594
GFF3595 - membrane protein, putative, at 482,187 to 482,618
GFF3595
GFF3596 - Sensory box histidine kinase, at 482,743 to 484,617
GFF3596
Position (kb) 482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 481.440 kb on + strand, within GFF3593 at 481.441 kb on - strand, within GFF3593 at 481.441 kb on - strand, within GFF3593 at 481.441 kb on - strand, within GFF3593 at 481.443 kb on + strand, within GFF3593 at 481.444 kb on - strand, within GFF3593 at 481.570 kb on - strand, within GFF3593 at 481.570 kb on - strand, within GFF3593 at 481.570 kb on - strand, within GFF3593 at 481.580 kb on + strand, within GFF3593 at 481.756 kb on + strand at 481.756 kb on + strand at 481.994 kb on + strand, within GFF3594 at 481.994 kb on + strand, within GFF3594 at 482.075 kb on + strand, within GFF3594 at 482.075 kb on + strand, within GFF3594 at 482.075 kb on + strand, within GFF3594 at 482.076 kb on - strand, within GFF3594 at 482.230 kb on + strand at 482.281 kb on + strand, within GFF3595 at 482.282 kb on - strand, within GFF3595 at 482.428 kb on + strand, within GFF3595 at 482.474 kb on - strand, within GFF3595 at 482.990 kb on + strand, within GFF3596 at 483.398 kb on + strand, within GFF3596 at 483.398 kb on + strand, within GFF3596 at 483.404 kb on + strand, within GFF3596 at 483.404 kb on + strand, within GFF3596 at 483.405 kb on - strand, within GFF3596 at 483.405 kb on - strand, within GFF3596 at 483.405 kb on - strand, within GFF3596 at 483.405 kb on - strand, within GFF3596 at 483.405 kb on - strand, within GFF3596
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 481,440 + GFF3593 0.62 -0.4 481,441 - GFF3593 0.62 +0.2 481,441 - GFF3593 0.62 -0.1 481,441 - GFF3593 0.62 +0.7 481,443 + GFF3593 0.62 +0.3 481,444 - GFF3593 0.62 +1.2 481,570 - GFF3593 0.74 +0.2 481,570 - GFF3593 0.74 -3.0 481,570 - GFF3593 0.74 +0.2 481,580 + GFF3593 0.75 +0.4 481,756 + -1.5 481,756 + +1.0 481,994 + GFF3594 0.46 +0.2 481,994 + GFF3594 0.46 +0.3 482,075 + GFF3594 0.74 -1.4 482,075 + GFF3594 0.74 +0.0 482,075 + GFF3594 0.74 -0.5 482,076 - GFF3594 0.74 -0.0 482,230 + +1.2 482,281 + GFF3595 0.22 -0.3 482,282 - GFF3595 0.22 -0.1 482,428 + GFF3595 0.56 -1.2 482,474 - GFF3595 0.66 -0.1 482,990 + GFF3596 0.13 +0.5 483,398 + GFF3596 0.35 +0.7 483,398 + GFF3596 0.35 -0.4 483,404 + GFF3596 0.35 -0.9 483,404 + GFF3596 0.35 +0.2 483,405 - GFF3596 0.35 -0.9 483,405 - GFF3596 0.35 +0.3 483,405 - GFF3596 0.35 -0.9 483,405 - GFF3596 0.35 +2.0 483,405 - GFF3596 0.35 -1.2
Or see this region's nucleotide sequence