Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3582 and GFF3583 are separated by 6 nucleotides GFF3583 and GFF3584 are separated by 108 nucleotides GFF3584 and GFF3585 are separated by 18 nucleotides GFF3585 and GFF3586 overlap by 16 nucleotides
GFF3582 - FIG00758123: hypothetical protein, at 469,439 to 470,713
GFF3582
GFF3583 - Alkaline phosphatase (EC 3.1.3.1), at 470,720 to 472,420
GFF3583
GFF3584 - FIG027190: Putative transmembrane protein, at 472,529 to 473,146
GFF3584
GFF3585 - hypothetical protein, at 473,165 to 473,284
GFF3585
GFF3586 - Probable signal peptide protein, at 473,269 to 473,688
GFF3586
Position (kb) 470
471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 469.796 kb on + strand, within GFF3582 at 469.796 kb on + strand, within GFF3582 at 469.796 kb on + strand, within GFF3582 at 469.796 kb on + strand, within GFF3582 at 469.796 kb on + strand, within GFF3582 at 469.799 kb on + strand, within GFF3582 at 469.799 kb on + strand, within GFF3582 at 469.800 kb on - strand, within GFF3582 at 469.800 kb on - strand, within GFF3582 at 470.066 kb on + strand, within GFF3582 at 470.075 kb on + strand, within GFF3582 at 470.076 kb on - strand, within GFF3582 at 470.076 kb on - strand, within GFF3582 at 470.145 kb on - strand, within GFF3582 at 470.366 kb on + strand, within GFF3582 at 470.366 kb on + strand, within GFF3582 at 470.366 kb on + strand, within GFF3582 at 470.441 kb on + strand, within GFF3582 at 470.442 kb on - strand, within GFF3582 at 470.531 kb on + strand, within GFF3582 at 470.531 kb on + strand, within GFF3582 at 470.541 kb on - strand, within GFF3582 at 470.725 kb on - strand at 470.913 kb on + strand, within GFF3583 at 470.913 kb on + strand, within GFF3583 at 470.914 kb on - strand, within GFF3583 at 470.955 kb on + strand, within GFF3583 at 470.955 kb on + strand, within GFF3583 at 470.955 kb on + strand, within GFF3583 at 470.956 kb on - strand, within GFF3583 at 471.405 kb on + strand, within GFF3583 at 471.406 kb on - strand, within GFF3583 at 471.406 kb on - strand, within GFF3583 at 471.429 kb on + strand, within GFF3583 at 471.429 kb on + strand, within GFF3583 at 471.429 kb on + strand, within GFF3583 at 471.429 kb on + strand, within GFF3583 at 471.429 kb on + strand, within GFF3583 at 471.429 kb on + strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.430 kb on - strand, within GFF3583 at 471.627 kb on + strand, within GFF3583 at 471.627 kb on + strand, within GFF3583 at 471.627 kb on + strand, within GFF3583 at 471.660 kb on + strand, within GFF3583 at 471.660 kb on + strand, within GFF3583 at 471.660 kb on + strand, within GFF3583 at 471.661 kb on - strand, within GFF3583 at 471.701 kb on + strand, within GFF3583 at 471.703 kb on - strand, within GFF3583 at 471.703 kb on - strand, within GFF3583 at 471.703 kb on - strand, within GFF3583 at 471.703 kb on - strand, within GFF3583 at 471.870 kb on + strand, within GFF3583 at 472.213 kb on - strand, within GFF3583 at 472.213 kb on - strand, within GFF3583 at 472.213 kb on - strand, within GFF3583 at 472.254 kb on + strand at 472.255 kb on - strand at 472.459 kb on - strand at 472.890 kb on + strand, within GFF3584 at 472.891 kb on - strand, within GFF3584 at 473.160 kb on + strand at 473.160 kb on + strand at 473.161 kb on - strand at 473.178 kb on + strand, within GFF3585 at 473.179 kb on - strand, within GFF3585 at 473.179 kb on - strand, within GFF3585 at 473.179 kb on - strand, within GFF3585 at 473.205 kb on - strand, within GFF3585 at 473.205 kb on - strand, within GFF3585 at 473.205 kb on - strand, within GFF3585 at 473.235 kb on + strand, within GFF3585 at 473.235 kb on + strand, within GFF3585 at 473.235 kb on + strand, within GFF3585 at 473.236 kb on - strand, within GFF3585 at 473.236 kb on - strand, within GFF3585 at 473.238 kb on + strand, within GFF3585 at 473.238 kb on + strand, within GFF3585 at 473.239 kb on - strand, within GFF3585 at 473.244 kb on + strand, within GFF3585
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 469,796 + GFF3582 0.28 +0.4 469,796 + GFF3582 0.28 +0.3 469,796 + GFF3582 0.28 -0.0 469,796 + GFF3582 0.28 -1.0 469,796 + GFF3582 0.28 -0.1 469,799 + GFF3582 0.28 -0.8 469,799 + GFF3582 0.28 -0.0 469,800 - GFF3582 0.28 -0.4 469,800 - GFF3582 0.28 -0.1 470,066 + GFF3582 0.49 -0.0 470,075 + GFF3582 0.50 -1.0 470,076 - GFF3582 0.50 -0.3 470,076 - GFF3582 0.50 -1.7 470,145 - GFF3582 0.55 -1.5 470,366 + GFF3582 0.73 -2.9 470,366 + GFF3582 0.73 -0.3 470,366 + GFF3582 0.73 +0.3 470,441 + GFF3582 0.79 +0.1 470,442 - GFF3582 0.79 +0.3 470,531 + GFF3582 0.86 +0.3 470,531 + GFF3582 0.86 +0.4 470,541 - GFF3582 0.86 -0.4 470,725 - -0.1 470,913 + GFF3583 0.11 -0.4 470,913 + GFF3583 0.11 -0.9 470,914 - GFF3583 0.11 -0.6 470,955 + GFF3583 0.14 -0.3 470,955 + GFF3583 0.14 -0.0 470,955 + GFF3583 0.14 -0.4 470,956 - GFF3583 0.14 -0.7 471,405 + GFF3583 0.40 -0.0 471,406 - GFF3583 0.40 -0.2 471,406 - GFF3583 0.40 -0.1 471,429 + GFF3583 0.42 +0.6 471,429 + GFF3583 0.42 -0.2 471,429 + GFF3583 0.42 -1.9 471,429 + GFF3583 0.42 +0.4 471,429 + GFF3583 0.42 -0.8 471,429 + GFF3583 0.42 +0.1 471,430 - GFF3583 0.42 +0.4 471,430 - GFF3583 0.42 -0.3 471,430 - GFF3583 0.42 +0.3 471,430 - GFF3583 0.42 -0.7 471,430 - GFF3583 0.42 -0.4 471,430 - GFF3583 0.42 -0.0 471,430 - GFF3583 0.42 -0.2 471,627 + GFF3583 0.53 +0.1 471,627 + GFF3583 0.53 -0.5 471,627 + GFF3583 0.53 +0.4 471,660 + GFF3583 0.55 -0.3 471,660 + GFF3583 0.55 +0.5 471,660 + GFF3583 0.55 -1.2 471,661 - GFF3583 0.55 -0.3 471,701 + GFF3583 0.58 +0.2 471,703 - GFF3583 0.58 +0.1 471,703 - GFF3583 0.58 +0.4 471,703 - GFF3583 0.58 -0.1 471,703 - GFF3583 0.58 -0.7 471,870 + GFF3583 0.68 +0.6 472,213 - GFF3583 0.88 +0.1 472,213 - GFF3583 0.88 +0.1 472,213 - GFF3583 0.88 -0.4 472,254 + -0.2 472,255 - -0.1 472,459 - +0.4 472,890 + GFF3584 0.58 +0.5 472,891 - GFF3584 0.59 +0.1 473,160 + -0.5 473,160 + +0.4 473,161 - -0.1 473,178 + GFF3585 0.11 +0.5 473,179 - GFF3585 0.12 -0.2 473,179 - GFF3585 0.12 -0.9 473,179 - GFF3585 0.12 -0.1 473,205 - GFF3585 0.33 -0.1 473,205 - GFF3585 0.33 +1.3 473,205 - GFF3585 0.33 -0.6 473,235 + GFF3585 0.58 +0.1 473,235 + GFF3585 0.58 +0.4 473,235 + GFF3585 0.58 -0.2 473,236 - GFF3585 0.59 +0.4 473,236 - GFF3585 0.59 -0.1 473,238 + GFF3585 0.61 -1.6 473,238 + GFF3585 0.61 +0.6 473,239 - GFF3585 0.62 +0.3 473,244 + GFF3585 0.66 +0.2
Or see this region's nucleotide sequence