Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3554 and GFF3555 are separated by 793 nucleotides
GFF3554 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 443,993 to 445,183
GFF3554
GFF3555 - Fatty acid desaturase, at 445,977 to 446,354
GFF3555
Position (kb) 445
446
447 Strain fitness (log2 ratio) -1
0
1
2 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.981 kb on + strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 444.982 kb on - strand, within GFF3554 at 445.177 kb on - strand at 445.287 kb on + strand at 445.288 kb on - strand at 445.288 kb on - strand at 445.504 kb on + strand at 445.505 kb on - strand at 445.505 kb on - strand at 445.746 kb on + strand at 445.747 kb on - strand at 445.806 kb on + strand at 445.807 kb on - strand at 446.088 kb on + strand, within GFF3555 at 446.146 kb on + strand, within GFF3555 at 446.146 kb on + strand, within GFF3555 at 446.182 kb on - strand, within GFF3555 at 446.217 kb on + strand, within GFF3555 at 446.266 kb on - strand, within GFF3555 at 446.286 kb on + strand, within GFF3555 at 446.286 kb on + strand, within GFF3555 at 446.286 kb on + strand, within GFF3555 at 446.287 kb on - strand, within GFF3555 at 446.287 kb on - strand, within GFF3555 at 446.287 kb on - strand, within GFF3555 at 446.295 kb on + strand, within GFF3555 at 446.296 kb on - strand, within GFF3555 at 446.406 kb on - strand at 446.471 kb on + strand at 446.471 kb on + strand at 446.471 kb on + strand at 446.830 kb on + strand at 446.830 kb on + strand at 446.831 kb on - strand at 446.835 kb on - strand at 446.835 kb on - strand at 447.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 444,981 + GFF3554 0.83 -1.1 444,981 + GFF3554 0.83 -0.4 444,981 + GFF3554 0.83 +0.2 444,981 + GFF3554 0.83 -0.7 444,981 + GFF3554 0.83 -1.2 444,981 + GFF3554 0.83 -0.6 444,981 + GFF3554 0.83 +0.4 444,981 + GFF3554 0.83 +1.1 444,981 + GFF3554 0.83 +0.2 444,981 + GFF3554 0.83 -1.1 444,981 + GFF3554 0.83 +0.4 444,981 + GFF3554 0.83 +0.4 444,982 - GFF3554 0.83 +0.2 444,982 - GFF3554 0.83 +1.3 444,982 - GFF3554 0.83 +0.7 444,982 - GFF3554 0.83 +0.8 444,982 - GFF3554 0.83 +0.5 444,982 - GFF3554 0.83 +0.2 444,982 - GFF3554 0.83 +0.2 444,982 - GFF3554 0.83 +0.1 444,982 - GFF3554 0.83 -0.5 444,982 - GFF3554 0.83 +0.3 445,177 - -0.7 445,287 + +0.5 445,288 - -0.3 445,288 - +0.6 445,504 + -0.3 445,505 - -0.8 445,505 - -0.1 445,746 + +0.1 445,747 - +0.7 445,806 + +0.5 445,807 - -0.7 446,088 + GFF3555 0.29 +0.3 446,146 + GFF3555 0.45 +0.2 446,146 + GFF3555 0.45 -1.0 446,182 - GFF3555 0.54 +0.2 446,217 + GFF3555 0.63 -0.1 446,266 - GFF3555 0.76 +1.7 446,286 + GFF3555 0.82 +0.2 446,286 + GFF3555 0.82 -0.3 446,286 + GFF3555 0.82 -0.1 446,287 - GFF3555 0.82 -0.6 446,287 - GFF3555 0.82 +0.4 446,287 - GFF3555 0.82 +2.3 446,295 + GFF3555 0.84 -1.0 446,296 - GFF3555 0.84 +0.2 446,406 - +0.2 446,471 + +0.0 446,471 + -1.2 446,471 + -0.4 446,830 + +0.7 446,830 + +1.4 446,831 - +0.5 446,835 - +0.3 446,835 - +0.2 447,271 + +0.1
Or see this region's nucleotide sequence