Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3324 and GFF3325 overlap by 12 nucleotides GFF3325 and GFF3326 are separated by 74 nucleotides GFF3326 and GFF3327 are separated by 12 nucleotides GFF3327 and GFF3328 overlap by 4 nucleotides
GFF3324 - Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22), at 209,820 to 211,205
GFF3324
GFF3325 - hypothetical protein, at 211,194 to 211,322
GFF3325
GFF3326 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 211,397 to 212,281
GFF3326
GFF3327 - Tetrapyrrole methylase family protein, at 212,294 to 213,097
GFF3327
GFF3328 - Septum formation protein Maf, at 213,094 to 213,708
GFF3328
Position (kb) 211
212
213 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 210.502 kb on + strand, within GFF3324 at 210.502 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.800 kb on - strand, within GFF3324 at 210.800 kb on - strand, within GFF3324 at 210.805 kb on + strand, within GFF3324 at 210.806 kb on - strand, within GFF3324 at 211.321 kb on - strand at 211.321 kb on - strand at 211.321 kb on - strand at 211.321 kb on - strand at 211.415 kb on + strand at 211.416 kb on + strand at 211.416 kb on + strand at 211.416 kb on + strand at 211.416 kb on + strand at 211.416 kb on + strand at 211.417 kb on - strand at 211.511 kb on + strand, within GFF3326 at 211.512 kb on - strand, within GFF3326 at 211.512 kb on - strand, within GFF3326 at 211.529 kb on + strand, within GFF3326 at 211.529 kb on + strand, within GFF3326 at 211.530 kb on - strand, within GFF3326 at 211.608 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.859 kb on + strand, within GFF3326 at 211.859 kb on + strand, within GFF3326 at 211.859 kb on + strand, within GFF3326 at 211.859 kb on + strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.980 kb on + strand, within GFF3326 at 211.980 kb on + strand, within GFF3326 at 211.981 kb on - strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.034 kb on - strand, within GFF3326 at 212.034 kb on - strand, within GFF3326 at 212.034 kb on - strand, within GFF3326 at 212.034 kb on - strand, within GFF3326 at 212.114 kb on - strand, within GFF3326 at 212.171 kb on + strand, within GFF3326 at 212.171 kb on + strand, within GFF3326 at 212.172 kb on - strand, within GFF3326 at 212.650 kb on + strand, within GFF3327 at 212.650 kb on + strand, within GFF3327 at 212.650 kb on + strand, within GFF3327 at 212.650 kb on + strand, within GFF3327 at 213.063 kb on + strand at 213.063 kb on + strand at 213.063 kb on + strand at 213.063 kb on + strand at 213.064 kb on - strand at 213.098 kb on - strand at 213.098 kb on - strand at 213.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 210,502 + GFF3324 0.49 -3.8 210,502 + GFF3324 0.49 -3.0 210,799 + GFF3324 0.71 -1.8 210,799 + GFF3324 0.71 -2.0 210,799 + GFF3324 0.71 -5.4 210,799 + GFF3324 0.71 -3.4 210,800 - GFF3324 0.71 -1.5 210,800 - GFF3324 0.71 -5.9 210,805 + GFF3324 0.71 -5.9 210,806 - GFF3324 0.71 -5.7 211,321 - +0.8 211,321 - +0.4 211,321 - +0.5 211,321 - +0.4 211,415 + -3.6 211,416 + -5.9 211,416 + -2.8 211,416 + -1.9 211,416 + -6.9 211,416 + -0.5 211,417 - -2.4 211,511 + GFF3326 0.13 -0.8 211,512 - GFF3326 0.13 -4.2 211,512 - GFF3326 0.13 -0.8 211,529 + GFF3326 0.15 -1.9 211,529 + GFF3326 0.15 -1.5 211,530 - GFF3326 0.15 -3.3 211,608 - GFF3326 0.24 -2.6 211,698 - GFF3326 0.34 -1.6 211,698 - GFF3326 0.34 -5.0 211,698 - GFF3326 0.34 -4.5 211,698 - GFF3326 0.34 -2.9 211,698 - GFF3326 0.34 -5.3 211,859 + GFF3326 0.52 -3.6 211,859 + GFF3326 0.52 -4.4 211,859 + GFF3326 0.52 -1.9 211,859 + GFF3326 0.52 -2.7 211,860 - GFF3326 0.52 -2.5 211,860 - GFF3326 0.52 -4.0 211,860 - GFF3326 0.52 -2.3 211,860 - GFF3326 0.52 -3.7 211,860 - GFF3326 0.52 -5.2 211,980 + GFF3326 0.66 -2.8 211,980 + GFF3326 0.66 -5.3 211,981 - GFF3326 0.66 -2.9 212,033 + GFF3326 0.72 -4.4 212,033 + GFF3326 0.72 -4.6 212,033 + GFF3326 0.72 -3.6 212,033 + GFF3326 0.72 -2.5 212,033 + GFF3326 0.72 -3.5 212,034 - GFF3326 0.72 -2.2 212,034 - GFF3326 0.72 -5.8 212,034 - GFF3326 0.72 -2.3 212,034 - GFF3326 0.72 -2.9 212,114 - GFF3326 0.81 -1.6 212,171 + GFF3326 0.87 -7.1 212,171 + GFF3326 0.87 -1.9 212,172 - GFF3326 0.88 -5.7 212,650 + GFF3327 0.44 -0.4 212,650 + GFF3327 0.44 -0.1 212,650 + GFF3327 0.44 +0.1 212,650 + GFF3327 0.44 +0.1 213,063 + -0.9 213,063 + -1.3 213,063 + -0.4 213,063 + -0.3 213,064 - -0.5 213,098 - +0.2 213,098 - -0.3 213,098 - -0.9
Or see this region's nucleotide sequence