Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3243

Experiment: Ying_OrganicAcid7 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3242 and GFF3243 are separated by 309 nucleotidesGFF3243 and GFF3244 are separated by 213 nucleotidesGFF3244 and GFF3245 are separated by 22 nucleotides GFF3242 - hypothetical protein, at 124,924 to 125,175 GFF3242 GFF3243 - Catalase (EC 1.11.1.6), at 125,485 to 127,014 GFF3243 GFF3244 - Rhodanese-related sulfurtransferases, at 127,228 to 127,755 GFF3244 GFF3245 - Transcriptional regulator, ArsR family, at 127,778 to 128,089 GFF3245 Position (kb) 125 126 127 128Strain fitness (log2 ratio) -2 -1 0 1at 124.512 kb on - strandat 124.659 kb on + strandat 124.659 kb on + strandat 124.660 kb on - strandat 124.662 kb on - strandat 124.665 kb on + strandat 124.666 kb on - strandat 124.666 kb on - strandat 124.815 kb on - strandat 124.840 kb on + strandat 124.890 kb on - strandat 124.890 kb on - strandat 124.912 kb on + strandat 124.912 kb on + strandat 124.994 kb on + strand, within GFF3242at 125.045 kb on + strand, within GFF3242at 125.045 kb on + strand, within GFF3242at 125.046 kb on - strand, within GFF3242at 125.121 kb on - strand, within GFF3242at 125.412 kb on + strandat 125.413 kb on - strandat 125.468 kb on + strandat 125.468 kb on + strandat 125.469 kb on - strandat 125.469 kb on - strandat 125.591 kb on + strandat 125.738 kb on + strand, within GFF3243at 125.739 kb on - strand, within GFF3243at 125.759 kb on + strand, within GFF3243at 125.849 kb on + strand, within GFF3243at 125.850 kb on - strand, within GFF3243at 125.867 kb on + strand, within GFF3243at 125.878 kb on + strand, within GFF3243at 125.878 kb on + strand, within GFF3243at 125.984 kb on + strand, within GFF3243at 125.984 kb on + strand, within GFF3243at 125.984 kb on + strand, within GFF3243at 125.985 kb on - strand, within GFF3243at 125.989 kb on - strand, within GFF3243at 125.989 kb on - strand, within GFF3243at 126.146 kb on + strand, within GFF3243at 126.146 kb on + strand, within GFF3243at 126.147 kb on - strand, within GFF3243at 126.218 kb on + strand, within GFF3243at 126.218 kb on + strand, within GFF3243at 126.218 kb on + strand, within GFF3243at 126.218 kb on + strand, within GFF3243at 126.219 kb on - strand, within GFF3243at 126.219 kb on - strand, within GFF3243at 126.261 kb on - strand, within GFF3243at 126.398 kb on + strand, within GFF3243at 126.398 kb on + strand, within GFF3243at 126.399 kb on + strand, within GFF3243at 126.399 kb on - strand, within GFF3243at 126.432 kb on - strand, within GFF3243at 126.504 kb on - strand, within GFF3243at 126.504 kb on - strand, within GFF3243at 126.647 kb on + strand, within GFF3243at 126.647 kb on + strand, within GFF3243at 126.647 kb on + strand, within GFF3243at 126.647 kb on + strand, within GFF3243at 126.648 kb on - strand, within GFF3243at 126.648 kb on - strand, within GFF3243at 126.776 kb on + strand, within GFF3243at 126.776 kb on + strand, within GFF3243at 126.777 kb on - strand, within GFF3243at 126.777 kb on - strand, within GFF3243at 126.777 kb on - strand, within GFF3243at 126.807 kb on + strand, within GFF3243at 126.807 kb on + strand, within GFF3243at 127.032 kb on + strandat 127.032 kb on + strandat 127.502 kb on + strand, within GFF3244at 127.502 kb on + strand, within GFF3244at 127.502 kb on + strand, within GFF3244at 127.503 kb on - strand, within GFF3244at 127.503 kb on - strand, within GFF3244at 127.503 kb on - strand, within GFF3244at 127.503 kb on - strand, within GFF3244at 127.618 kb on + strand, within GFF3244at 127.842 kb on + strand, within GFF3245at 127.842 kb on + strand, within GFF3245at 127.842 kb on + strand, within GFF3245at 127.843 kb on - strand, within GFF3245at 127.843 kb on - strand, within GFF3245at 127.869 kb on + strand, within GFF3245

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1
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124,512 - -0.0
124,659 + +0.4
124,659 + -1.1
124,660 - +0.0
124,662 - -0.6
124,665 + +0.4
124,666 - +0.8
124,666 - -0.1
124,815 - -0.3
124,840 + +0.2
124,890 - -0.9
124,890 - -0.3
124,912 + +0.3
124,912 + -0.0
124,994 + GFF3242 0.28 +0.2
125,045 + GFF3242 0.48 -0.2
125,045 + GFF3242 0.48 +0.5
125,046 - GFF3242 0.48 -0.1
125,121 - GFF3242 0.78 +1.2
125,412 + -0.0
125,413 - -0.0
125,468 + +0.8
125,468 + +0.1
125,469 - +0.2
125,469 - -0.3
125,591 + +0.9
125,738 + GFF3243 0.17 +0.3
125,739 - GFF3243 0.17 -0.2
125,759 + GFF3243 0.18 -0.6
125,849 + GFF3243 0.24 +0.2
125,850 - GFF3243 0.24 -0.5
125,867 + GFF3243 0.25 +0.0
125,878 + GFF3243 0.26 +0.2
125,878 + GFF3243 0.26 -0.0
125,984 + GFF3243 0.33 -0.0
125,984 + GFF3243 0.33 -0.4
125,984 + GFF3243 0.33 -0.6
125,985 - GFF3243 0.33 +0.5
125,989 - GFF3243 0.33 -0.3
125,989 - GFF3243 0.33 +0.5
126,146 + GFF3243 0.43 +0.3
126,146 + GFF3243 0.43 -1.0
126,147 - GFF3243 0.43 -0.1
126,218 + GFF3243 0.48 -0.5
126,218 + GFF3243 0.48 +1.3
126,218 + GFF3243 0.48 +0.5
126,218 + GFF3243 0.48 -0.7
126,219 - GFF3243 0.48 +0.3
126,219 - GFF3243 0.48 -0.6
126,261 - GFF3243 0.51 +0.2
126,398 + GFF3243 0.60 -0.3
126,398 + GFF3243 0.60 +0.8
126,399 + GFF3243 0.60 -0.8
126,399 - GFF3243 0.60 +0.1
126,432 - GFF3243 0.62 +0.6
126,504 - GFF3243 0.67 +0.4
126,504 - GFF3243 0.67 +0.0
126,647 + GFF3243 0.76 -0.1
126,647 + GFF3243 0.76 -0.1
126,647 + GFF3243 0.76 -0.1
126,647 + GFF3243 0.76 -0.5
126,648 - GFF3243 0.76 +1.3
126,648 - GFF3243 0.76 -0.4
126,776 + GFF3243 0.84 +0.0
126,776 + GFF3243 0.84 -0.3
126,777 - GFF3243 0.84 +0.1
126,777 - GFF3243 0.84 -1.3
126,777 - GFF3243 0.84 -1.3
126,807 + GFF3243 0.86 +0.3
126,807 + GFF3243 0.86 +0.5
127,032 + -0.6
127,032 + -0.2
127,502 + GFF3244 0.52 -0.2
127,502 + GFF3244 0.52 +0.8
127,502 + GFF3244 0.52 +0.7
127,503 - GFF3244 0.52 +0.2
127,503 - GFF3244 0.52 -0.0
127,503 - GFF3244 0.52 -0.4
127,503 - GFF3244 0.52 +0.8
127,618 + GFF3244 0.74 +0.4
127,842 + GFF3245 0.21 -0.2
127,842 + GFF3245 0.21 +0.5
127,842 + GFF3245 0.21 -1.9
127,843 - GFF3245 0.21 +0.5
127,843 - GFF3245 0.21 -0.2
127,869 + GFF3245 0.29 +0.4

Or see this region's nucleotide sequence