Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3221 and GFF3222 are separated by 312 nucleotides GFF3222 and GFF3223 are separated by 46 nucleotides
GFF3221 - hypothetical protein, at 101,941 to 103,146
GFF3221
GFF3222 - Probable transmembrane protein, at 103,459 to 104,223
GFF3222
GFF3223 - Piwi domain protein, at 104,270 to 105,724
GFF3223
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1 at 102.521 kb on + strand, within GFF3221 at 102.522 kb on - strand, within GFF3221 at 102.522 kb on - strand, within GFF3221 at 102.581 kb on + strand, within GFF3221 at 102.582 kb on - strand, within GFF3221 at 102.587 kb on + strand, within GFF3221 at 102.630 kb on - strand, within GFF3221 at 103.196 kb on + strand at 103.259 kb on - strand at 103.259 kb on - strand at 103.299 kb on - strand at 103.313 kb on - strand at 103.357 kb on - strand at 103.418 kb on + strand at 103.480 kb on - strand at 103.480 kb on - strand at 103.582 kb on + strand, within GFF3222 at 103.582 kb on + strand, within GFF3222 at 103.582 kb on + strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.583 kb on - strand, within GFF3222 at 103.750 kb on + strand, within GFF3222 at 103.750 kb on + strand, within GFF3222 at 103.750 kb on + strand, within GFF3222 at 103.751 kb on - strand, within GFF3222 at 103.751 kb on - strand, within GFF3222 at 103.751 kb on - strand, within GFF3222 at 103.932 kb on + strand, within GFF3222 at 103.933 kb on - strand, within GFF3222 at 103.933 kb on - strand, within GFF3222 at 103.981 kb on + strand, within GFF3222 at 103.982 kb on - strand, within GFF3222 at 104.272 kb on - strand at 104.272 kb on - strand at 104.506 kb on - strand, within GFF3223 at 104.506 kb on - strand, within GFF3223 at 104.808 kb on + strand, within GFF3223 at 104.970 kb on + strand, within GFF3223 at 104.970 kb on + strand, within GFF3223 at 105.004 kb on - strand, within GFF3223 at 105.004 kb on - strand, within GFF3223 at 105.085 kb on - strand, within GFF3223
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 102,521 + GFF3221 0.48 +0.5 102,522 - GFF3221 0.48 -0.0 102,522 - GFF3221 0.48 +0.6 102,581 + GFF3221 0.53 +0.3 102,582 - GFF3221 0.53 -0.1 102,587 + GFF3221 0.54 -1.1 102,630 - GFF3221 0.57 -1.3 103,196 + -0.1 103,259 - +0.1 103,259 - -0.7 103,299 - +0.7 103,313 - -0.2 103,357 - +0.3 103,418 + -0.5 103,480 - +0.5 103,480 - -0.3 103,582 + GFF3222 0.16 +1.5 103,582 + GFF3222 0.16 -0.4 103,582 + GFF3222 0.16 -2.2 103,583 - GFF3222 0.16 -0.7 103,583 - GFF3222 0.16 +0.5 103,583 - GFF3222 0.16 -0.6 103,583 - GFF3222 0.16 +0.2 103,583 - GFF3222 0.16 +0.2 103,583 - GFF3222 0.16 -0.2 103,583 - GFF3222 0.16 -0.7 103,750 + GFF3222 0.38 -1.1 103,750 + GFF3222 0.38 -0.5 103,750 + GFF3222 0.38 -0.8 103,751 - GFF3222 0.38 +1.7 103,751 - GFF3222 0.38 -0.7 103,751 - GFF3222 0.38 +0.4 103,932 + GFF3222 0.62 +0.2 103,933 - GFF3222 0.62 +1.0 103,933 - GFF3222 0.62 -0.2 103,981 + GFF3222 0.68 +0.0 103,982 - GFF3222 0.68 -1.0 104,272 - -0.2 104,272 - -0.0 104,506 - GFF3223 0.16 -1.0 104,506 - GFF3223 0.16 -0.0 104,808 + GFF3223 0.37 -0.2 104,970 + GFF3223 0.48 +1.1 104,970 + GFF3223 0.48 +0.1 105,004 - GFF3223 0.50 -0.1 105,004 - GFF3223 0.50 +1.0 105,085 - GFF3223 0.56 -1.1
Or see this region's nucleotide sequence