Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3191

Experiment: Ying_OrganicAcid7 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3190 and GFF3191 are separated by 89 nucleotidesGFF3191 and GFF3192 are separated by 127 nucleotidesGFF3192 and GFF3193 overlap by 30 nucleotides GFF3190 - Chromosome partition protein smc, at 71,621 to 74,065 GFF3190 GFF3191 - hypothetical protein, at 74,155 to 74,664 GFF3191 GFF3192 - hypothetical protein, at 74,792 to 75,022 GFF3192 GFF3193 - hypothetical protein, at 74,993 to 75,223 GFF3193 Position (kb) 74 75Strain fitness (log2 ratio) -1 0 1at 73.830 kb on + strandat 74.145 kb on + strandat 74.492 kb on + strand, within GFF3191at 74.492 kb on + strand, within GFF3191at 75.085 kb on - strand, within GFF3193

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1
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73,830 + +1.3
74,145 + -0.1
74,492 + GFF3191 0.66 -0.8
74,492 + GFF3191 0.66 -1.6
75,085 - GFF3193 0.40 +0.2

Or see this region's nucleotide sequence