Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3106 and GFF3107 overlap by 4 nucleotides GFF3107 and GFF3108 overlap by 4 nucleotides GFF3108 and GFF3109 are separated by 12 nucleotides GFF3109 and GFF3110 are separated by 21 nucleotides
GFF3106 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 182,468 to 183,967
GFF3106
GFF3107 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 183,964 to 184,554
GFF3107
GFF3108 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 184,551 to 185,618
GFF3108
GFF3109 - Lysine exporter protein (LYSE/YGGA), at 185,631 to 186,269
GFF3109
GFF3110 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 186,291 to 187,340
GFF3110
Position (kb) 184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 183.587 kb on + strand, within GFF3106 at 183.588 kb on - strand, within GFF3106 at 183.588 kb on - strand, within GFF3106 at 183.755 kb on + strand, within GFF3106 at 183.755 kb on + strand, within GFF3106 at 183.756 kb on - strand, within GFF3106 at 183.756 kb on - strand, within GFF3106 at 183.756 kb on - strand, within GFF3106 at 183.773 kb on + strand, within GFF3106 at 183.773 kb on + strand, within GFF3106 at 183.774 kb on - strand, within GFF3106 at 183.774 kb on - strand, within GFF3106 at 183.782 kb on + strand, within GFF3106 at 183.783 kb on - strand, within GFF3106 at 183.783 kb on - strand, within GFF3106 at 183.845 kb on + strand at 183.845 kb on + strand at 183.845 kb on + strand at 183.846 kb on - strand at 183.997 kb on + strand at 183.997 kb on + strand at 183.997 kb on + strand at 183.997 kb on + strand at 183.998 kb on - strand at 183.998 kb on - strand at 183.998 kb on - strand at 183.998 kb on - strand at 184.027 kb on + strand, within GFF3107 at 184.027 kb on + strand, within GFF3107 at 184.028 kb on - strand, within GFF3107 at 184.559 kb on - strand at 184.782 kb on + strand, within GFF3108 at 184.782 kb on + strand, within GFF3108 at 184.783 kb on - strand, within GFF3108 at 184.783 kb on - strand, within GFF3108 at 184.809 kb on + strand, within GFF3108 at 184.809 kb on + strand, within GFF3108 at 184.809 kb on + strand, within GFF3108 at 184.809 kb on + strand, within GFF3108 at 184.810 kb on - strand, within GFF3108 at 184.810 kb on - strand, within GFF3108 at 184.810 kb on - strand, within GFF3108 at 184.810 kb on - strand, within GFF3108 at 184.815 kb on + strand, within GFF3108 at 184.816 kb on - strand, within GFF3108 at 184.816 kb on - strand, within GFF3108 at 184.816 kb on - strand, within GFF3108 at 184.998 kb on + strand, within GFF3108 at 184.998 kb on + strand, within GFF3108 at 184.999 kb on - strand, within GFF3108 at 185.100 kb on + strand, within GFF3108 at 185.101 kb on - strand, within GFF3108 at 185.709 kb on + strand, within GFF3109 at 185.709 kb on + strand, within GFF3109 at 185.709 kb on + strand, within GFF3109 at 185.709 kb on + strand, within GFF3109 at 185.710 kb on - strand, within GFF3109 at 185.710 kb on - strand, within GFF3109 at 185.710 kb on - strand, within GFF3109 at 185.710 kb on - strand, within GFF3109 at 185.878 kb on - strand, within GFF3109 at 186.132 kb on + strand, within GFF3109 at 186.132 kb on + strand, within GFF3109 at 186.132 kb on + strand, within GFF3109 at 186.133 kb on - strand, within GFF3109
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 183,587 + GFF3106 0.75 -1.7 183,588 - GFF3106 0.75 -3.6 183,588 - GFF3106 0.75 -2.4 183,755 + GFF3106 0.86 -1.4 183,755 + GFF3106 0.86 -2.6 183,756 - GFF3106 0.86 -3.2 183,756 - GFF3106 0.86 -2.1 183,756 - GFF3106 0.86 -1.4 183,773 + GFF3106 0.87 -2.4 183,773 + GFF3106 0.87 -3.6 183,774 - GFF3106 0.87 -3.1 183,774 - GFF3106 0.87 -2.6 183,782 + GFF3106 0.88 -3.4 183,783 - GFF3106 0.88 -1.2 183,783 - GFF3106 0.88 -3.3 183,845 + -3.5 183,845 + -2.0 183,845 + -3.5 183,846 - -3.6 183,997 + -1.5 183,997 + -1.7 183,997 + -2.0 183,997 + +0.2 183,998 - -1.3 183,998 - -2.6 183,998 - -2.7 183,998 - -2.5 184,027 + GFF3107 0.11 -2.7 184,027 + GFF3107 0.11 -2.8 184,028 - GFF3107 0.11 -2.4 184,559 - -1.2 184,782 + GFF3108 0.22 +0.2 184,782 + GFF3108 0.22 +0.3 184,783 - GFF3108 0.22 -0.3 184,783 - GFF3108 0.22 +0.3 184,809 + GFF3108 0.24 -1.5 184,809 + GFF3108 0.24 -0.4 184,809 + GFF3108 0.24 -1.3 184,809 + GFF3108 0.24 +0.3 184,810 - GFF3108 0.24 +0.0 184,810 - GFF3108 0.24 -0.0 184,810 - GFF3108 0.24 +0.6 184,810 - GFF3108 0.24 +0.2 184,815 + GFF3108 0.25 -0.8 184,816 - GFF3108 0.25 +0.1 184,816 - GFF3108 0.25 +0.0 184,816 - GFF3108 0.25 -0.7 184,998 + GFF3108 0.42 -3.2 184,998 + GFF3108 0.42 -0.2 184,999 - GFF3108 0.42 -0.1 185,100 + GFF3108 0.51 -0.4 185,101 - GFF3108 0.51 +0.2 185,709 + GFF3109 0.12 +1.1 185,709 + GFF3109 0.12 +1.0 185,709 + GFF3109 0.12 +0.6 185,709 + GFF3109 0.12 -0.4 185,710 - GFF3109 0.12 +0.4 185,710 - GFF3109 0.12 -0.3 185,710 - GFF3109 0.12 -0.7 185,710 - GFF3109 0.12 -0.3 185,878 - GFF3109 0.39 -0.6 186,132 + GFF3109 0.78 -0.4 186,132 + GFF3109 0.78 +0.4 186,132 + GFF3109 0.78 -0.7 186,133 - GFF3109 0.79 -0.3
Or see this region's nucleotide sequence