Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3085 and GFF3086 are separated by 9 nucleotides GFF3086 and GFF3087 are separated by 51 nucleotides GFF3087 and GFF3088 are separated by 45 nucleotides
GFF3085 - putative exported protein, at 162,929 to 163,909
GFF3085
GFF3086 - Glutathione S-transferase (EC 2.5.1.18), at 163,919 to 164,590
GFF3086
GFF3087 - Transcriptional regulator, LysR family, at 164,642 to 165,589
GFF3087
GFF3088 - FIG01003856: hypothetical protein, at 165,635 to 166,684
GFF3088
Position (kb) 164
165
166 Strain fitness (log2 ratio) -1
0
1 at 163.868 kb on + strand at 163.968 kb on + strand at 164.136 kb on + strand, within GFF3086 at 164.137 kb on - strand, within GFF3086 at 164.137 kb on - strand, within GFF3086 at 164.179 kb on + strand, within GFF3086 at 164.179 kb on + strand, within GFF3086 at 164.179 kb on - strand, within GFF3086 at 164.292 kb on + strand, within GFF3086 at 164.376 kb on + strand, within GFF3086 at 164.376 kb on + strand, within GFF3086 at 164.376 kb on + strand, within GFF3086 at 164.376 kb on + strand, within GFF3086 at 164.377 kb on - strand, within GFF3086 at 164.500 kb on - strand, within GFF3086 at 164.514 kb on + strand, within GFF3086 at 164.631 kb on - strand at 164.631 kb on - strand at 164.802 kb on + strand, within GFF3087 at 164.850 kb on + strand, within GFF3087 at 165.010 kb on - strand, within GFF3087 at 165.025 kb on - strand, within GFF3087 at 165.025 kb on - strand, within GFF3087 at 165.025 kb on - strand, within GFF3087 at 165.551 kb on - strand at 165.908 kb on + strand, within GFF3088 at 165.908 kb on + strand, within GFF3088 at 165.908 kb on + strand, within GFF3088 at 165.909 kb on - strand, within GFF3088 at 165.909 kb on - strand, within GFF3088 at 165.909 kb on - strand, within GFF3088 at 165.909 kb on - strand, within GFF3088 at 166.010 kb on + strand, within GFF3088 at 166.010 kb on + strand, within GFF3088 at 166.011 kb on - strand, within GFF3088 at 166.011 kb on - strand, within GFF3088 at 166.011 kb on - strand, within GFF3088 at 166.170 kb on - strand, within GFF3088 at 166.275 kb on - strand, within GFF3088 at 166.275 kb on - strand, within GFF3088 at 166.526 kb on + strand, within GFF3088 at 166.526 kb on + strand, within GFF3088 at 166.527 kb on - strand, within GFF3088
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 163,868 + +1.6 163,968 + -1.7 164,136 + GFF3086 0.32 -0.6 164,137 - GFF3086 0.32 -0.7 164,137 - GFF3086 0.32 +0.5 164,179 + GFF3086 0.39 +0.3 164,179 + GFF3086 0.39 +0.4 164,179 - GFF3086 0.39 +0.2 164,292 + GFF3086 0.56 +0.8 164,376 + GFF3086 0.68 +0.1 164,376 + GFF3086 0.68 -0.7 164,376 + GFF3086 0.68 -0.7 164,376 + GFF3086 0.68 +0.1 164,377 - GFF3086 0.68 +0.6 164,500 - GFF3086 0.86 -1.0 164,514 + GFF3086 0.89 +0.3 164,631 - -1.4 164,631 - +0.3 164,802 + GFF3087 0.17 +0.2 164,850 + GFF3087 0.22 +0.2 165,010 - GFF3087 0.39 -0.0 165,025 - GFF3087 0.40 +0.2 165,025 - GFF3087 0.40 +0.0 165,025 - GFF3087 0.40 +1.1 165,551 - +0.0 165,908 + GFF3088 0.26 -0.4 165,908 + GFF3088 0.26 -0.2 165,908 + GFF3088 0.26 -1.0 165,909 - GFF3088 0.26 -0.6 165,909 - GFF3088 0.26 -0.1 165,909 - GFF3088 0.26 -0.1 165,909 - GFF3088 0.26 +1.0 166,010 + GFF3088 0.36 -1.3 166,010 + GFF3088 0.36 -0.3 166,011 - GFF3088 0.36 +1.1 166,011 - GFF3088 0.36 +0.0 166,011 - GFF3088 0.36 +0.3 166,170 - GFF3088 0.51 +0.7 166,275 - GFF3088 0.61 +1.6 166,275 - GFF3088 0.61 +0.1 166,526 + GFF3088 0.85 -1.4 166,526 + GFF3088 0.85 +0.5 166,527 - GFF3088 0.85 -0.4
Or see this region's nucleotide sequence