Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3028

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
104,398	+				+0.2
104,398	+				-0.4
104,398	+				-1.6
104,399	-				+0.0
104,430	+				+0.9
104,430	+				+0.7
104,430	+				+1.1
104,430	+				-0.7
104,431	+				+0.5
104,431	-				-0.3
104,431	-				-0.2
104,431	-				+0.5
104,563	+		GFF3027	0.20	-0.3
104,830	+		GFF3027	0.60	+1.0
104,830	+		GFF3027	0.60	-0.4
104,830	+		GFF3027	0.60	-0.3
104,830	+		GFF3027	0.60	+0.2
104,831	-		GFF3027	0.60	-0.4
104,831	-		GFF3027	0.60	+0.3
105,076	+				-0.1
105,077	-				-0.4
105,077	-				-0.1
105,077	-				-0.1
105,077	-				+0.1
105,232	-				+0.7
105,232	-				+0.0
105,232	-				-0.6
105,468	+		GFF3028	0.26	+0.3
105,469	-		GFF3028	0.26	+0.3
105,469	-		GFF3028	0.26	+0.5
105,471	+		GFF3028	0.26	-0.4
105,498	+		GFF3028	0.28	+0.2
105,910	-		GFF3028	0.57	-0.6
106,831	+		GFF3029	0.19	+0.7
106,831	+		GFF3029	0.19	-1.0
106,831	+		GFF3029	0.19	+0.1
106,831	+		GFF3029	0.19	-0.4
106,832	-		GFF3029	0.19	-0.8
106,832	-		GFF3029	0.19	-1.0
106,832	-		GFF3029	0.19	-0.5
106,832	-		GFF3029	0.19	-0.5
106,832	-		GFF3029	0.19	+1.0
106,861	+		GFF3029	0.22	-0.3
106,961	-		GFF3029	0.32	+0.6
107,005	+		GFF3029	0.37	-0.7
107,005	+		GFF3029	0.37	-0.4
107,185	+		GFF3029	0.55	-0.2
107,185	+		GFF3029	0.55	+0.3
107,186	-		GFF3029	0.55	-0.3
107,186	-		GFF3029	0.55	+0.1
107,186	-		GFF3029	0.55	+0.4
107,186	-		GFF3029	0.55	+1.4
107,410	+		GFF3029	0.78	+0.1
107,411	-		GFF3029	0.78	+0.4
107,441	-		GFF3029	0.81	-1.9