Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2998 and GFF2999 are separated by 24 nucleotides GFF2999 and GFF3000 are separated by 1 nucleotides GFF3000 and GFF3001 overlap by 4 nucleotides
GFF2998 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41), at 76,855 to 78,120
GFF2998
GFF2999 - Acyl carrier protein (ACP1), at 78,145 to 78,429
GFF2999
GFF3000 - FIG017861: hypothetical protein, at 78,431 to 79,093
GFF3000
GFF3001 - FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase, at 79,090 to 80,436
GFF3001
Position (kb) 78
79 Strain fitness (log2 ratio) -1
0
1
2 at 77.461 kb on + strand, within GFF2998 at 77.462 kb on - strand, within GFF2998 at 77.656 kb on + strand, within GFF2998 at 77.656 kb on + strand, within GFF2998 at 77.656 kb on + strand, within GFF2998 at 77.656 kb on + strand, within GFF2998 at 77.768 kb on - strand, within GFF2998 at 78.331 kb on + strand, within GFF2999 at 78.332 kb on - strand, within GFF2999 at 78.689 kb on + strand, within GFF3000 at 78.689 kb on + strand, within GFF3000 at 78.689 kb on + strand, within GFF3000 at 78.689 kb on + strand, within GFF3000 at 78.689 kb on + strand, within GFF3000 at 78.689 kb on + strand, within GFF3000 at 78.689 kb on + strand, within GFF3000 at 78.690 kb on - strand, within GFF3000 at 78.690 kb on - strand, within GFF3000 at 78.690 kb on - strand, within GFF3000 at 78.690 kb on - strand, within GFF3000 at 78.690 kb on - strand, within GFF3000 at 78.690 kb on - strand, within GFF3000 at 78.690 kb on - strand, within GFF3000 at 78.690 kb on - strand, within GFF3000 at 78.692 kb on + strand, within GFF3000 at 78.692 kb on + strand, within GFF3000 at 78.692 kb on + strand, within GFF3000 at 78.692 kb on + strand, within GFF3000 at 78.692 kb on + strand, within GFF3000 at 78.693 kb on - strand, within GFF3000 at 78.693 kb on - strand, within GFF3000 at 78.693 kb on - strand, within GFF3000 at 79.046 kb on + strand at 79.046 kb on + strand at 79.047 kb on - strand at 79.047 kb on - strand at 79.047 kb on - strand at 79.253 kb on - strand, within GFF3001 at 79.354 kb on + strand, within GFF3001 at 79.354 kb on + strand, within GFF3001
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 77,461 + GFF2998 0.48 +0.3 77,462 - GFF2998 0.48 -0.1 77,656 + GFF2998 0.63 -1.1 77,656 + GFF2998 0.63 -0.3 77,656 + GFF2998 0.63 +1.0 77,656 + GFF2998 0.63 +0.2 77,768 - GFF2998 0.72 -0.7 78,331 + GFF2999 0.65 +0.8 78,332 - GFF2999 0.66 -0.2 78,689 + GFF3000 0.39 +2.6 78,689 + GFF3000 0.39 -0.3 78,689 + GFF3000 0.39 +0.4 78,689 + GFF3000 0.39 +0.5 78,689 + GFF3000 0.39 +0.3 78,689 + GFF3000 0.39 -1.2 78,689 + GFF3000 0.39 -0.0 78,690 - GFF3000 0.39 +0.2 78,690 - GFF3000 0.39 -0.6 78,690 - GFF3000 0.39 -0.2 78,690 - GFF3000 0.39 -0.1 78,690 - GFF3000 0.39 -0.2 78,690 - GFF3000 0.39 -1.3 78,690 - GFF3000 0.39 -0.5 78,690 - GFF3000 0.39 -0.1 78,692 + GFF3000 0.39 +0.0 78,692 + GFF3000 0.39 +0.3 78,692 + GFF3000 0.39 -1.0 78,692 + GFF3000 0.39 -1.3 78,692 + GFF3000 0.39 -0.0 78,693 - GFF3000 0.40 -0.1 78,693 - GFF3000 0.40 +0.4 78,693 - GFF3000 0.40 -0.3 79,046 + +1.4 79,046 + -0.6 79,047 - -0.3 79,047 - +0.6 79,047 - +1.5 79,253 - GFF3001 0.12 -0.5 79,354 + GFF3001 0.20 +0.0 79,354 + GFF3001 0.20 -0.0
Or see this region's nucleotide sequence