Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2917 and GFF2918 are separated by 9 nucleotides GFF2918 and GFF2919 are separated by 129 nucleotides GFF2919 and GFF2920 are separated by 69 nucleotides GFF2920 and GFF2921 are separated by 96 nucleotides GFF2921 and GFF2922 are separated by 150 nucleotides
GFF2917 - LSU ribosomal protein L29p (L35e), at 5,055 to 5,261
GFF2917
GFF2918 - SSU ribosomal protein S17p (S11e), at 5,271 to 5,540
GFF2918
GFF2919 - Peroxiredoxin, at 5,670 to 6,176
GFF2919
GFF2920 - Histone acetyltransferase HPA2 and related acetyltransferases, at 6,246 to 6,722
GFF2920
GFF2921 - Cytochrome b, at 6,819 to 7,487
GFF2921
GFF2922 - putative c'cytochrome, at 7,638 to 8,087
GFF2922
Position (kb) 6
7 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5.617 kb on + strand at 5.618 kb on - strand at 5.618 kb on - strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.716 kb on - strand at 5.716 kb on - strand at 5.716 kb on - strand at 5.716 kb on - strand at 5.716 kb on - strand at 6.069 kb on + strand, within GFF2919 at 6.069 kb on + strand, within GFF2919 at 6.070 kb on - strand, within GFF2919 at 6.070 kb on - strand, within GFF2919 at 6.073 kb on - strand, within GFF2919 at 6.265 kb on + strand at 6.265 kb on + strand at 6.265 kb on + strand at 6.265 kb on + strand at 6.265 kb on + strand at 6.266 kb on - strand at 6.266 kb on - strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.292 kb on + strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.293 kb on - strand at 6.296 kb on - strand, within GFF2920 at 6.296 kb on - strand, within GFF2920 at 6.328 kb on + strand, within GFF2920 at 6.328 kb on + strand, within GFF2920 at 6.329 kb on - strand, within GFF2920 at 6.382 kb on + strand, within GFF2920 at 6.382 kb on + strand, within GFF2920 at 6.382 kb on + strand, within GFF2920 at 6.382 kb on + strand, within GFF2920 at 6.383 kb on - strand, within GFF2920 at 6.383 kb on - strand, within GFF2920 at 6.505 kb on + strand, within GFF2920 at 6.505 kb on + strand, within GFF2920 at 6.505 kb on + strand, within GFF2920 at 6.505 kb on + strand, within GFF2920 at 6.505 kb on + strand, within GFF2920 at 6.505 kb on + strand, within GFF2920 at 6.505 kb on + strand, within GFF2920 at 6.505 kb on + strand, within GFF2920 at 6.505 kb on + strand, within GFF2920 at 6.505 kb on + strand, within GFF2920 at 6.506 kb on - strand, within GFF2920 at 6.506 kb on - strand, within GFF2920 at 6.506 kb on - strand, within GFF2920 at 6.506 kb on - strand, within GFF2920 at 6.506 kb on - strand, within GFF2920 at 6.506 kb on - strand, within GFF2920 at 6.506 kb on - strand, within GFF2920 at 6.506 kb on - strand, within GFF2920 at 6.506 kb on - strand, within GFF2920 at 6.506 kb on - strand, within GFF2920 at 6.583 kb on + strand, within GFF2920 at 6.583 kb on + strand, within GFF2920 at 6.583 kb on + strand, within GFF2920 at 6.583 kb on + strand, within GFF2920 at 6.583 kb on + strand, within GFF2920 at 6.584 kb on - strand, within GFF2920 at 6.584 kb on - strand, within GFF2920 at 6.584 kb on - strand, within GFF2920 at 6.655 kb on + strand, within GFF2920 at 6.655 kb on + strand, within GFF2920 at 6.656 kb on - strand, within GFF2920 at 6.656 kb on - strand, within GFF2920 at 6.794 kb on + strand at 6.794 kb on + strand at 6.794 kb on + strand at 6.794 kb on + strand at 6.795 kb on - strand at 6.795 kb on - strand at 6.795 kb on - strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.796 kb on + strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.797 kb on - strand at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.994 kb on + strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.995 kb on - strand, within GFF2921 at 6.997 kb on + strand, within GFF2921 at 6.998 kb on - strand, within GFF2921 at 7.063 kb on + strand, within GFF2921 at 7.064 kb on - strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.179 kb on + strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.180 kb on - strand, within GFF2921 at 7.252 kb on + strand, within GFF2921 at 7.253 kb on - strand, within GFF2921 at 7.253 kb on - strand, within GFF2921 at 7.253 kb on - strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.276 kb on + strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.277 kb on - strand, within GFF2921 at 7.358 kb on - strand, within GFF2921 at 7.358 kb on - strand, within GFF2921 at 7.523 kb on + strand at 7.523 kb on + strand at 7.523 kb on + strand at 7.524 kb on - strand at 7.524 kb on - strand at 7.524 kb on - strand at 7.531 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.532 kb on + strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.533 kb on - strand at 7.534 kb on + strand at 7.534 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.572 kb on + strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.573 kb on - strand at 7.608 kb on + strand at 7.608 kb on + strand at 7.645 kb on + strand at 7.646 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 5,617 + -0.3 5,618 - -2.6 5,618 - -1.6 5,715 + -0.1 5,715 + +0.0 5,715 + +0.3 5,715 + -0.9 5,715 + +1.6 5,715 + -0.2 5,715 + -0.2 5,715 + +0.1 5,716 - +1.2 5,716 - -0.4 5,716 - +0.1 5,716 - +1.4 5,716 - -0.3 6,069 + GFF2919 0.79 -0.6 6,069 + GFF2919 0.79 +1.1 6,070 - GFF2919 0.79 +0.2 6,070 - GFF2919 0.79 -0.1 6,073 - GFF2919 0.79 -1.5 6,265 + +0.3 6,265 + -1.2 6,265 + +0.2 6,265 + -0.3 6,265 + -0.6 6,266 - +0.4 6,266 - -0.1 6,292 + +0.3 6,292 + -0.3 6,292 + -0.1 6,292 + +0.3 6,292 + +0.7 6,292 + -0.0 6,292 + -0.1 6,292 + +0.0 6,292 + +0.2 6,292 + -0.5 6,292 + -0.1 6,292 + -0.1 6,292 + -0.1 6,292 + -0.3 6,292 + +0.0 6,292 + -0.1 6,292 + +0.3 6,293 - +0.4 6,293 - +0.1 6,293 - -0.8 6,293 - -0.2 6,293 - +0.2 6,293 - -0.1 6,293 - +0.0 6,293 - -0.2 6,293 - -0.8 6,293 - -0.0 6,293 - +0.2 6,293 - +0.3 6,293 - -0.9 6,293 - +0.4 6,293 - -0.6 6,293 - +0.6 6,296 - GFF2920 0.10 -0.2 6,296 - GFF2920 0.10 -0.4 6,328 + GFF2920 0.17 +0.0 6,328 + GFF2920 0.17 -0.2 6,329 - GFF2920 0.17 +0.5 6,382 + GFF2920 0.29 -0.9 6,382 + GFF2920 0.29 -0.2 6,382 + GFF2920 0.29 +0.6 6,382 + GFF2920 0.29 +0.1 6,383 - GFF2920 0.29 -0.6 6,383 - GFF2920 0.29 +0.1 6,505 + GFF2920 0.54 +0.0 6,505 + GFF2920 0.54 +0.0 6,505 + GFF2920 0.54 +0.3 6,505 + GFF2920 0.54 +0.7 6,505 + GFF2920 0.54 +0.9 6,505 + GFF2920 0.54 -0.8 6,505 + GFF2920 0.54 +0.0 6,505 + GFF2920 0.54 +0.5 6,505 + GFF2920 0.54 +0.0 6,505 + GFF2920 0.54 +0.2 6,506 - GFF2920 0.55 -0.1 6,506 - GFF2920 0.55 +1.0 6,506 - GFF2920 0.55 +1.3 6,506 - GFF2920 0.55 +0.5 6,506 - GFF2920 0.55 +0.3 6,506 - GFF2920 0.55 -0.8 6,506 - GFF2920 0.55 +0.7 6,506 - GFF2920 0.55 +1.1 6,506 - GFF2920 0.55 +0.2 6,506 - GFF2920 0.55 -0.3 6,583 + GFF2920 0.71 +0.6 6,583 + GFF2920 0.71 -0.7 6,583 + GFF2920 0.71 +0.1 6,583 + GFF2920 0.71 +0.1 6,583 + GFF2920 0.71 +0.0 6,584 - GFF2920 0.71 +0.2 6,584 - GFF2920 0.71 -1.2 6,584 - GFF2920 0.71 +1.0 6,655 + GFF2920 0.86 +0.7 6,655 + GFF2920 0.86 -1.0 6,656 - GFF2920 0.86 -1.1 6,656 - GFF2920 0.86 -0.0 6,794 + -0.2 6,794 + +0.1 6,794 + -1.0 6,794 + +1.4 6,795 - +1.0 6,795 - -0.2 6,795 - +0.2 6,796 + -0.4 6,796 + +0.1 6,796 + +0.0 6,796 + -0.5 6,796 + -1.7 6,796 + +0.7 6,796 + +0.1 6,796 + -0.8 6,796 + -1.2 6,796 + +0.6 6,796 + +0.0 6,796 + -0.4 6,796 + -0.5 6,796 + +0.3 6,796 + +0.1 6,796 + -0.0 6,796 + -0.4 6,796 + +0.6 6,796 + -0.5 6,796 + +1.0 6,796 + +0.6 6,796 + +0.1 6,796 + +0.6 6,797 - +0.4 6,797 - +0.3 6,797 - +0.5 6,797 - -0.5 6,797 - -0.6 6,797 - +0.6 6,797 - +0.3 6,797 - +0.1 6,797 - +0.0 6,797 - -0.1 6,797 - -0.1 6,797 - +0.1 6,797 - -0.5 6,994 + GFF2921 0.26 +0.0 6,994 + GFF2921 0.26 +0.8 6,994 + GFF2921 0.26 -0.0 6,994 + GFF2921 0.26 -0.2 6,994 + GFF2921 0.26 +0.1 6,994 + GFF2921 0.26 +0.6 6,994 + GFF2921 0.26 -0.0 6,994 + GFF2921 0.26 +0.7 6,995 - GFF2921 0.26 +0.1 6,995 - GFF2921 0.26 +0.5 6,995 - GFF2921 0.26 +0.0 6,995 - GFF2921 0.26 -0.2 6,995 - GFF2921 0.26 -0.2 6,995 - GFF2921 0.26 -0.2 6,995 - GFF2921 0.26 +0.0 6,997 + GFF2921 0.27 +0.4 6,998 - GFF2921 0.27 +0.3 7,063 + GFF2921 0.36 +0.3 7,064 - GFF2921 0.37 +1.4 7,179 + GFF2921 0.54 +0.1 7,179 + GFF2921 0.54 -0.1 7,179 + GFF2921 0.54 +1.3 7,179 + GFF2921 0.54 -0.0 7,179 + GFF2921 0.54 +1.2 7,180 - GFF2921 0.54 -0.9 7,180 - GFF2921 0.54 +0.1 7,180 - GFF2921 0.54 +0.8 7,180 - GFF2921 0.54 +0.1 7,180 - GFF2921 0.54 +1.4 7,180 - GFF2921 0.54 +0.2 7,180 - GFF2921 0.54 -1.2 7,252 + GFF2921 0.65 -0.7 7,253 - GFF2921 0.65 +0.4 7,253 - GFF2921 0.65 +0.4 7,253 - GFF2921 0.65 -0.2 7,276 + GFF2921 0.68 +0.8 7,276 + GFF2921 0.68 +0.8 7,276 + GFF2921 0.68 +1.1 7,276 + GFF2921 0.68 +0.4 7,276 + GFF2921 0.68 -1.3 7,276 + GFF2921 0.68 +0.2 7,276 + GFF2921 0.68 +0.1 7,276 + GFF2921 0.68 -0.7 7,276 + GFF2921 0.68 +0.1 7,276 + GFF2921 0.68 -0.9 7,277 - GFF2921 0.68 +1.1 7,277 - GFF2921 0.68 -0.8 7,277 - GFF2921 0.68 -1.2 7,277 - GFF2921 0.68 -0.1 7,277 - GFF2921 0.68 -0.4 7,277 - GFF2921 0.68 -1.0 7,277 - GFF2921 0.68 -1.3 7,277 - GFF2921 0.68 +0.0 7,277 - GFF2921 0.68 +0.4 7,358 - GFF2921 0.81 -0.4 7,358 - GFF2921 0.81 +0.2 7,523 + -0.2 7,523 + -0.2 7,523 + -0.1 7,524 - -0.0 7,524 - -2.2 7,524 - -0.7 7,531 + +0.7 7,532 + -0.6 7,532 + +0.1 7,532 + +0.6 7,532 + +0.7 7,532 + -0.9 7,532 + +0.2 7,532 + -0.1 7,532 + +0.4 7,532 + +0.4 7,532 + -1.1 7,532 + +0.9 7,532 + +0.3 7,532 + -0.8 7,532 + +0.3 7,532 + +0.5 7,532 + +0.1 7,532 + -1.1 7,533 - +0.0 7,533 - +0.2 7,533 - +0.4 7,533 - -0.3 7,533 - +0.0 7,533 - +0.4 7,533 - -1.1 7,533 - -0.5 7,533 - -0.2 7,533 - -1.2 7,533 - -1.3 7,533 - -0.3 7,533 - +0.8 7,533 - -0.2 7,533 - +2.8 7,533 - -0.4 7,533 - +0.1 7,534 + +0.0 7,534 + -0.0 7,572 + -0.7 7,572 + +0.1 7,572 + +0.2 7,572 + +0.0 7,572 + +0.3 7,572 + -0.0 7,572 + -1.2 7,572 + +0.3 7,573 - -0.2 7,573 - -1.1 7,573 - -0.9 7,573 - +0.3 7,573 - -0.4 7,573 - -0.3 7,573 - -0.4 7,573 - +0.9 7,573 - +0.4 7,573 - -0.4 7,573 - -0.5 7,608 + -1.2 7,608 + +0.0 7,645 + +0.1 7,646 - +0.5
Or see this region's nucleotide sequence