Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2886 and GFF2887 are separated by 3 nucleotides GFF2887 and GFF2888 are separated by 109 nucleotides GFF2888 and GFF2889 are separated by 2 nucleotides GFF2889 and GFF2890 are separated by 10 nucleotides
GFF2886 - regulatory protein, putative, at 476,899 to 477,240
GFF2886
GFF2887 - hypothetical protein, at 477,244 to 477,711
GFF2887
GFF2888 - Aliphatic amidase AmiE (EC 3.5.1.4), at 477,821 to 478,867
GFF2888
GFF2889 - Rubisco activation protein CbbQ, at 478,870 to 479,670
GFF2889
GFF2890 - Rubisco activation protein CbbO, at 479,681 to 481,285
GFF2890
Position (kb) 477
478
479 Strain fitness (log2 ratio) -1
0
1
2 at 477.738 kb on + strand at 477.738 kb on + strand at 477.738 kb on + strand at 477.752 kb on + strand at 477.752 kb on + strand at 477.752 kb on + strand at 477.752 kb on + strand at 477.753 kb on - strand at 477.754 kb on + strand at 477.754 kb on + strand at 477.755 kb on - strand at 477.820 kb on + strand at 477.820 kb on + strand at 478.005 kb on - strand, within GFF2888 at 478.005 kb on - strand, within GFF2888 at 478.025 kb on + strand, within GFF2888 at 478.026 kb on - strand, within GFF2888 at 478.026 kb on - strand, within GFF2888 at 478.026 kb on - strand, within GFF2888 at 478.043 kb on + strand, within GFF2888 at 478.043 kb on + strand, within GFF2888 at 478.043 kb on + strand, within GFF2888 at 478.044 kb on - strand, within GFF2888 at 478.044 kb on - strand, within GFF2888 at 478.044 kb on - strand, within GFF2888 at 478.161 kb on - strand, within GFF2888 at 478.172 kb on + strand, within GFF2888 at 478.173 kb on - strand, within GFF2888 at 478.220 kb on + strand, within GFF2888 at 478.278 kb on - strand, within GFF2888 at 478.278 kb on - strand, within GFF2888 at 478.401 kb on - strand, within GFF2888 at 478.401 kb on - strand, within GFF2888 at 478.401 kb on - strand, within GFF2888 at 478.401 kb on - strand, within GFF2888 at 478.406 kb on + strand, within GFF2888 at 478.466 kb on + strand, within GFF2888 at 478.466 kb on + strand, within GFF2888 at 478.467 kb on - strand, within GFF2888 at 478.505 kb on + strand, within GFF2888 at 478.505 kb on + strand, within GFF2888 at 478.577 kb on + strand, within GFF2888 at 478.730 kb on + strand, within GFF2888 at 478.739 kb on + strand, within GFF2888 at 478.912 kb on + strand at 478.913 kb on - strand at 479.314 kb on + strand, within GFF2889 at 479.315 kb on - strand, within GFF2889 at 479.315 kb on - strand, within GFF2889 at 479.315 kb on - strand, within GFF2889
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 477,738 + +0.3 477,738 + +0.7 477,738 + -0.1 477,752 + +1.1 477,752 + +1.3 477,752 + +0.7 477,752 + +0.6 477,753 - +0.5 477,754 + +0.4 477,754 + -0.2 477,755 - +1.6 477,820 + -1.4 477,820 + -0.3 478,005 - GFF2888 0.18 +0.3 478,005 - GFF2888 0.18 -0.0 478,025 + GFF2888 0.19 -1.5 478,026 - GFF2888 0.20 -0.2 478,026 - GFF2888 0.20 +0.2 478,026 - GFF2888 0.20 -0.7 478,043 + GFF2888 0.21 +0.3 478,043 + GFF2888 0.21 -0.0 478,043 + GFF2888 0.21 +0.4 478,044 - GFF2888 0.21 +0.2 478,044 - GFF2888 0.21 +0.3 478,044 - GFF2888 0.21 +0.3 478,161 - GFF2888 0.32 +0.3 478,172 + GFF2888 0.34 +0.7 478,173 - GFF2888 0.34 +0.7 478,220 + GFF2888 0.38 -0.2 478,278 - GFF2888 0.44 +2.0 478,278 - GFF2888 0.44 -0.4 478,401 - GFF2888 0.55 +0.2 478,401 - GFF2888 0.55 -1.0 478,401 - GFF2888 0.55 +0.0 478,401 - GFF2888 0.55 +0.1 478,406 + GFF2888 0.56 +0.3 478,466 + GFF2888 0.62 -0.9 478,466 + GFF2888 0.62 -0.4 478,467 - GFF2888 0.62 +0.0 478,505 + GFF2888 0.65 -0.4 478,505 + GFF2888 0.65 +0.1 478,577 + GFF2888 0.72 +0.1 478,730 + GFF2888 0.87 +0.2 478,739 + GFF2888 0.88 -0.3 478,912 + -0.2 478,913 - +0.2 479,314 + GFF2889 0.55 -1.0 479,315 - GFF2889 0.56 +0.1 479,315 - GFF2889 0.56 +0.0 479,315 - GFF2889 0.56 -0.1
Or see this region's nucleotide sequence