Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2806 and GFF2807 are separated by 22 nucleotides GFF2807 and GFF2808 are separated by 26 nucleotides GFF2808 and GFF2809 are separated by 165 nucleotides
GFF2806 - Pyrroline-5-carboxylate reductase (EC 1.5.1.2), at 404,820 to 405,650
GFF2806
GFF2807 - Glycerol kinase (EC 2.7.1.30), at 405,673 to 407,166
GFF2807
GFF2808 - Glycerol-3-phosphate regulon repressor, DeoR family, at 407,193 to 407,975
GFF2808
GFF2809 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 408,141 to 409,217
GFF2809
Position (kb) 405
406
407
408 Strain fitness (log2 ratio) -2
-1
0
1 at 404.814 kb on + strand at 404.814 kb on + strand at 404.814 kb on + strand at 404.814 kb on + strand at 404.815 kb on - strand at 404.815 kb on - strand at 404.821 kb on + strand at 404.930 kb on - strand, within GFF2806 at 405.097 kb on + strand, within GFF2806 at 405.107 kb on - strand, within GFF2806 at 405.722 kb on + strand at 405.803 kb on + strand at 405.803 kb on - strand at 406.112 kb on + strand, within GFF2807 at 406.382 kb on + strand, within GFF2807 at 406.382 kb on + strand, within GFF2807 at 406.770 kb on - strand, within GFF2807 at 406.881 kb on - strand, within GFF2807 at 407.159 kb on + strand at 407.160 kb on - strand at 408.013 kb on + strand at 408.013 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.045 kb on - strand at 408.048 kb on + strand at 408.048 kb on + strand at 408.049 kb on - strand at 408.067 kb on + strand at 408.067 kb on + strand at 408.080 kb on + strand at 408.081 kb on - strand at 408.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 404,814 + +0.2 404,814 + +1.0 404,814 + -0.6 404,814 + -0.0 404,815 - -0.1 404,815 - -1.2 404,821 + -1.9 404,930 - GFF2806 0.13 -1.3 405,097 + GFF2806 0.33 +0.5 405,107 - GFF2806 0.35 -2.0 405,722 + +0.6 405,803 + +0.2 405,803 - -0.2 406,112 + GFF2807 0.29 -0.0 406,382 + GFF2807 0.47 -0.4 406,382 + GFF2807 0.47 -0.4 406,770 - GFF2807 0.73 +0.4 406,881 - GFF2807 0.81 -0.6 407,159 + -0.8 407,160 - -0.2 408,013 + -0.0 408,013 + -0.4 408,044 + +0.4 408,044 + -2.0 408,045 - -0.2 408,048 + +0.0 408,048 + +0.6 408,049 - -0.8 408,067 + +0.4 408,067 + -0.3 408,080 + -0.0 408,081 - -0.1 408,081 - +0.1
Or see this region's nucleotide sequence