Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2709 and GFF2710 are separated by 149 nucleotides GFF2710 and GFF2711 are separated by 90 nucleotides
GFF2709 - hypothetical protein, at 299,968 to 301,005
GFF2709
GFF2710 - Transcriptional regulator, LysR family, at 301,155 to 302,090
GFF2710
GFF2711 - putative exported protein, at 302,181 to 303,161
GFF2711
Position (kb) 301
302
303 Strain fitness (log2 ratio) -1
0
1
2 at 300.197 kb on + strand, within GFF2709 at 300.198 kb on - strand, within GFF2709 at 300.198 kb on - strand, within GFF2709 at 300.533 kb on + strand, within GFF2709 at 300.705 kb on - strand, within GFF2709 at 300.741 kb on - strand, within GFF2709 at 300.914 kb on + strand at 300.915 kb on - strand at 300.915 kb on - strand at 301.072 kb on - strand at 301.089 kb on + strand at 301.093 kb on + strand at 301.093 kb on + strand at 301.129 kb on + strand at 301.129 kb on + strand at 301.129 kb on + strand at 301.130 kb on - strand at 301.130 kb on - strand at 301.130 kb on - strand at 301.130 kb on - strand at 301.130 kb on - strand at 301.353 kb on + strand, within GFF2710 at 301.353 kb on + strand, within GFF2710 at 301.636 kb on - strand, within GFF2710 at 301.636 kb on - strand, within GFF2710 at 301.749 kb on + strand, within GFF2710 at 302.158 kb on - strand at 302.457 kb on + strand, within GFF2711 at 302.458 kb on - strand, within GFF2711 at 302.523 kb on + strand, within GFF2711 at 302.798 kb on + strand, within GFF2711 at 302.798 kb on + strand, within GFF2711 at 302.883 kb on + strand, within GFF2711 at 302.883 kb on - strand, within GFF2711 at 302.884 kb on - strand, within GFF2711
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 300,197 + GFF2709 0.22 +0.8 300,198 - GFF2709 0.22 -0.6 300,198 - GFF2709 0.22 +0.1 300,533 + GFF2709 0.54 -0.1 300,705 - GFF2709 0.71 -0.2 300,741 - GFF2709 0.74 -0.3 300,914 + -0.3 300,915 - -1.0 300,915 - +0.3 301,072 - -0.0 301,089 + -0.0 301,093 + +0.1 301,093 + -0.2 301,129 + +0.9 301,129 + +0.8 301,129 + +0.6 301,130 - -0.2 301,130 - +1.6 301,130 - -1.5 301,130 - -0.3 301,130 - +0.3 301,353 + GFF2710 0.21 -0.4 301,353 + GFF2710 0.21 -1.4 301,636 - GFF2710 0.51 -0.3 301,636 - GFF2710 0.51 -0.4 301,749 + GFF2710 0.63 +0.5 302,158 - +2.6 302,457 + GFF2711 0.28 -0.2 302,458 - GFF2711 0.28 -1.3 302,523 + GFF2711 0.35 +0.2 302,798 + GFF2711 0.63 -1.0 302,798 + GFF2711 0.63 -0.6 302,883 + GFF2711 0.72 +1.1 302,883 - GFF2711 0.72 -0.6 302,884 - GFF2711 0.72 -0.3
Or see this region's nucleotide sequence