Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2636 and GFF2637 are separated by 126 nucleotides GFF2637 and GFF2638 are separated by 76 nucleotides GFF2638 and GFF2639 are separated by 34 nucleotides
GFF2636 - Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) @ 2-heptaprenyl-1,4-naphthoquinone methyltransferase (EC 2.1.1.163), at 231,989 to 232,870
GFF2636
GFF2637 - FIG01210189: hypothetical protein, at 232,997 to 234,643
GFF2637
GFF2638 - Conserved uncharacterized protein CreA, at 234,720 to 235,193
GFF2638
GFF2639 - hypothetical protein, at 235,228 to 235,707
GFF2639
Position (kb) 232
233
234
235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 232.407 kb on - strand, within GFF2636 at 232.407 kb on - strand, within GFF2636 at 232.407 kb on - strand, within GFF2636 at 232.484 kb on + strand, within GFF2636 at 232.484 kb on + strand, within GFF2636 at 232.484 kb on + strand, within GFF2636 at 232.485 kb on - strand, within GFF2636 at 233.093 kb on + strand at 233.094 kb on - strand at 233.406 kb on - strand, within GFF2637 at 233.444 kb on + strand, within GFF2637 at 233.667 kb on - strand, within GFF2637 at 233.703 kb on - strand, within GFF2637 at 233.813 kb on + strand, within GFF2637 at 233.813 kb on + strand, within GFF2637 at 233.813 kb on + strand, within GFF2637 at 234.011 kb on + strand, within GFF2637 at 234.011 kb on + strand, within GFF2637 at 234.012 kb on - strand, within GFF2637 at 234.113 kb on + strand, within GFF2637 at 234.113 kb on + strand, within GFF2637 at 234.113 kb on + strand, within GFF2637 at 234.167 kb on + strand, within GFF2637 at 234.443 kb on + strand, within GFF2637 at 234.444 kb on - strand, within GFF2637 at 234.684 kb on + strand at 234.684 kb on + strand at 234.701 kb on + strand at 234.701 kb on + strand at 234.701 kb on + strand at 234.702 kb on - strand at 234.702 kb on - strand at 234.702 kb on - strand at 234.885 kb on + strand, within GFF2638 at 234.885 kb on + strand, within GFF2638 at 234.885 kb on + strand, within GFF2638 at 234.886 kb on - strand, within GFF2638 at 234.886 kb on - strand, within GFF2638 at 234.886 kb on - strand, within GFF2638 at 234.886 kb on - strand, within GFF2638 at 235.098 kb on + strand, within GFF2638 at 235.108 kb on - strand, within GFF2638 at 235.215 kb on + strand at 235.215 kb on + strand at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.642 kb on + strand, within GFF2639
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 232,407 - GFF2636 0.47 +0.2 232,407 - GFF2636 0.47 -0.5 232,407 - GFF2636 0.47 -0.2 232,484 + GFF2636 0.56 -1.2 232,484 + GFF2636 0.56 +0.1 232,484 + GFF2636 0.56 +1.6 232,485 - GFF2636 0.56 -0.2 233,093 + +0.2 233,094 - +0.1 233,406 - GFF2637 0.25 +0.8 233,444 + GFF2637 0.27 -0.5 233,667 - GFF2637 0.41 -0.1 233,703 - GFF2637 0.43 +1.6 233,813 + GFF2637 0.50 +0.0 233,813 + GFF2637 0.50 -0.8 233,813 + GFF2637 0.50 +1.4 234,011 + GFF2637 0.62 -0.8 234,011 + GFF2637 0.62 +0.8 234,012 - GFF2637 0.62 +1.2 234,113 + GFF2637 0.68 -0.5 234,113 + GFF2637 0.68 +0.9 234,113 + GFF2637 0.68 -0.7 234,167 + GFF2637 0.71 -0.2 234,443 + GFF2637 0.88 -0.9 234,444 - GFF2637 0.88 +0.9 234,684 + -1.8 234,684 + -0.0 234,701 + -0.1 234,701 + +0.7 234,701 + +0.6 234,702 - -0.5 234,702 - -0.3 234,702 - +0.2 234,885 + GFF2638 0.35 +0.2 234,885 + GFF2638 0.35 +0.3 234,885 + GFF2638 0.35 -1.2 234,886 - GFF2638 0.35 -0.7 234,886 - GFF2638 0.35 -1.2 234,886 - GFF2638 0.35 -0.2 234,886 - GFF2638 0.35 -0.9 235,098 + GFF2638 0.80 -0.0 235,108 - GFF2638 0.82 -0.3 235,215 + -0.1 235,215 + -0.4 235,339 + GFF2639 0.23 +1.2 235,339 + GFF2639 0.23 +2.1 235,339 + GFF2639 0.23 -2.1 235,339 + GFF2639 0.23 -0.2 235,339 + GFF2639 0.23 +1.6 235,339 + GFF2639 0.23 +0.5 235,339 + GFF2639 0.23 +0.1 235,340 - GFF2639 0.23 -1.1 235,340 - GFF2639 0.23 -1.6 235,340 - GFF2639 0.23 -0.1 235,340 - GFF2639 0.23 -0.0 235,642 + GFF2639 0.86 +0.1
Or see this region's nucleotide sequence