Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2626 and GFF2627 overlap by 11 nucleotides GFF2627 and GFF2628 overlap by 4 nucleotides GFF2628 and GFF2629 are separated by 27 nucleotides
GFF2626 - Nucleoside ABC transporter, permease protein 1, at 218,893 to 219,921
GFF2626
GFF2627 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 219,911 to 220,705
GFF2627
GFF2628 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 220,702 to 221,520
GFF2628
GFF2629 - Probable VANILLIN dehydrogenase oxidoreductase protein (EC 1.-.-.-), at 221,548 to 223,002
GFF2629
Position (kb) 220
221
222 Strain fitness (log2 ratio) -1
0
1 at 219.718 kb on + strand, within GFF2626 at 219.718 kb on + strand, within GFF2626 at 219.719 kb on - strand, within GFF2626 at 219.760 kb on + strand, within GFF2626 at 219.761 kb on - strand, within GFF2626 at 220.265 kb on + strand, within GFF2627 at 220.266 kb on - strand, within GFF2627 at 220.266 kb on - strand, within GFF2627 at 221.353 kb on + strand, within GFF2628 at 221.354 kb on - strand, within GFF2628 at 221.354 kb on - strand, within GFF2628 at 221.911 kb on + strand, within GFF2629 at 222.149 kb on - strand, within GFF2629 at 222.149 kb on - strand, within GFF2629 at 222.149 kb on - strand, within GFF2629
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 219,718 + GFF2626 0.80 +0.8 219,718 + GFF2626 0.80 +0.2 219,719 - GFF2626 0.80 -0.2 219,760 + GFF2626 0.84 +0.4 219,761 - GFF2626 0.84 +0.2 220,265 + GFF2627 0.45 -0.2 220,266 - GFF2627 0.45 -0.4 220,266 - GFF2627 0.45 -0.2 221,353 + GFF2628 0.79 -1.6 221,354 - GFF2628 0.80 +0.1 221,354 - GFF2628 0.80 -0.6 221,911 + GFF2629 0.25 -0.0 222,149 - GFF2629 0.41 +0.6 222,149 - GFF2629 0.41 -0.4 222,149 - GFF2629 0.41 +0.6
Or see this region's nucleotide sequence