Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2531

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
111,751	+		GFF2530	0.19	-0.2
111,751	+		GFF2530	0.19	-0.4
111,752	-		GFF2530	0.19	-0.7
111,805	+		GFF2530	0.29	-0.3
111,806	-		GFF2530	0.29	-0.4
111,979	+		GFF2530	0.59	+0.1
111,979	+		GFF2530	0.59	+0.9
111,980	-		GFF2530	0.59	+0.3
112,000	+		GFF2530	0.63	+1.0
112,000	+		GFF2530	0.63	-1.0
112,000	+		GFF2530	0.63	-0.1
112,000	+		GFF2530	0.63	-0.0
112,001	-		GFF2530	0.63	-0.5
112,001	-		GFF2530	0.63	-0.9
112,060	+		GFF2530	0.73	+0.5
112,061	-		GFF2530	0.74	-0.5
112,061	-		GFF2530	0.74	+0.8
112,061	-		GFF2530	0.74	-0.6
112,061	-		GFF2530	0.74	-0.3
112,061	-		GFF2530	0.74	+1.2
112,061	-		GFF2530	0.74	-0.0
112,061	-		GFF2530	0.74	+0.9
112,061	-		GFF2530	0.74	+0.2
112,061	-		GFF2530	0.74	+0.9
112,396	+				+0.9
112,396	+				+0.4
112,396	+				+0.6
112,397	-				-0.1
112,397	-				-0.1
112,397	-				+0.3
112,397	-				+1.5
112,538	+				-0.7
112,538	+				+1.4
112,538	+				-0.6
112,538	+				-1.3
112,538	+				-0.0
112,538	+				+0.4
112,539	-				+0.2
112,546	-				-0.6
112,728	+				+0.1
112,728	+				-0.4
112,729	-				-1.1
112,747	+				-0.1
112,747	+				-0.4
112,748	-				-0.0
112,999	+		GFF2531	0.30	-0.3
112,999	+		GFF2531	0.30	-0.5
112,999	+		GFF2531	0.30	-0.3
112,999	+		GFF2531	0.30	-0.2
113,000	-		GFF2531	0.31	-0.3
113,000	-		GFF2531	0.31	-0.1
113,000	-		GFF2531	0.31	-0.4
113,000	-		GFF2531	0.31	-1.4
113,182	+		GFF2531	0.52	+0.4
113,182	+		GFF2531	0.52	-0.2
113,182	+		GFF2531	0.52	-1.4
113,182	+		GFF2531	0.52	-2.7
113,182	+		GFF2531	0.52	-0.5
113,182	+		GFF2531	0.52	-0.2
113,182	+		GFF2531	0.52	-1.1
113,182	+		GFF2531	0.52	-0.4
113,182	+		GFF2531	0.52	-0.0
113,182	+		GFF2531	0.52	-0.8
113,183	-		GFF2531	0.52	-0.2
113,183	-		GFF2531	0.52	-0.7
113,183	-		GFF2531	0.52	-0.8
113,183	-		GFF2531	0.52	-1.0
113,183	-		GFF2531	0.52	-0.4
113,183	-		GFF2531	0.52	+1.2
113,183	-		GFF2531	0.52	-0.1
113,183	-		GFF2531	0.52	-0.7
113,183	-		GFF2531	0.52	-0.7
113,183	-		GFF2531	0.52	-1.2
113,183	-		GFF2531	0.52	-0.7
113,225	-		GFF2531	0.57	-0.5
113,233	+		GFF2531	0.58	-0.6
113,233	+		GFF2531	0.58	-0.6
113,233	+		GFF2531	0.58	-1.3
113,234	-		GFF2531	0.58	-0.0
113,234	-		GFF2531	0.58	-0.5
113,234	-		GFF2531	0.58	-0.7
113,234	-		GFF2531	0.58	-0.8
113,234	-		GFF2531	0.58	-0.3
113,234	-		GFF2531	0.58	+0.5
113,234	-		GFF2531	0.58	+1.6
113,512	-				+0.8
114,023	+		GFF2532	0.78	-0.4
114,023	+		GFF2532	0.78	+0.2
114,023	+		GFF2532	0.78	-0.3
114,023	+		GFF2532	0.78	+0.2
114,024	-		GFF2532	0.78	+0.1
114,024	-		GFF2532	0.78	-0.3
114,449	+				-0.5
114,449	+				-0.6
114,449	+				-0.7
114,449	+				+0.2
114,449	+				-0.2
114,449	+				-2.1