Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2411 and GFF2412 are separated by 5 nucleotides GFF2412 and GFF2413 are separated by 312 nucleotides GFF2413 and GFF2414 are separated by 46 nucleotides GFF2414 and GFF2415 are separated by 216 nucleotides
GFF2411 - Phosphoglycerol transferase I (EC 2.7.8.20), at 57,937 to 59,697
GFF2411
GFF2412 - Phosphoglycerol transferase I (EC 2.7.8.20), at 59,703 to 60,581
GFF2412
GFF2413 - hypothetical protein, at 60,894 to 61,061
GFF2413
GFF2414 - hypothetical protein, at 61,108 to 61,290
GFF2414
GFF2415 - hypothetical protein, at 61,507 to 61,722
GFF2415
Position (kb) 59
60
61 Strain fitness (log2 ratio) -2
-1
0
1 at 59.008 kb on + strand, within GFF2411 at 59.009 kb on - strand, within GFF2411 at 59.023 kb on + strand, within GFF2411 at 59.024 kb on - strand, within GFF2411 at 59.033 kb on - strand, within GFF2411 at 59.033 kb on - strand, within GFF2411 at 59.039 kb on - strand, within GFF2411 at 59.123 kb on - strand, within GFF2411 at 59.326 kb on + strand, within GFF2411 at 59.335 kb on + strand, within GFF2411 at 59.820 kb on + strand, within GFF2412 at 59.820 kb on + strand, within GFF2412 at 60.072 kb on + strand, within GFF2412 at 60.408 kb on + strand, within GFF2412 at 60.408 kb on + strand, within GFF2412 at 60.497 kb on + strand at 60.498 kb on - strand at 60.498 kb on - strand at 60.543 kb on + strand at 60.559 kb on - strand at 60.826 kb on + strand at 60.827 kb on - strand at 60.866 kb on - strand at 60.982 kb on - strand, within GFF2413 at 60.982 kb on - strand, within GFF2413 at 61.003 kb on + strand, within GFF2413 at 61.003 kb on + strand, within GFF2413 at 61.098 kb on - strand at 61.337 kb on - strand at 61.402 kb on + strand at 61.402 kb on + strand at 61.418 kb on - strand at 61.418 kb on - strand at 61.418 kb on - strand at 61.418 kb on - strand at 61.461 kb on + strand at 61.462 kb on - strand at 61.462 kb on - strand at 61.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 59,008 + GFF2411 0.61 +0.8 59,009 - GFF2411 0.61 +1.0 59,023 + GFF2411 0.62 +0.6 59,024 - GFF2411 0.62 +0.1 59,033 - GFF2411 0.62 +0.0 59,033 - GFF2411 0.62 +0.1 59,039 - GFF2411 0.63 -0.5 59,123 - GFF2411 0.67 +0.0 59,326 + GFF2411 0.79 +0.0 59,335 + GFF2411 0.79 -2.0 59,820 + GFF2412 0.13 -0.7 59,820 + GFF2412 0.13 -0.3 60,072 + GFF2412 0.42 -0.9 60,408 + GFF2412 0.80 +1.2 60,408 + GFF2412 0.80 +0.3 60,497 + +1.0 60,498 - -0.1 60,498 - -0.0 60,543 + +1.4 60,559 - -0.4 60,826 + -0.3 60,827 - -0.1 60,866 - +0.4 60,982 - GFF2413 0.52 -0.2 60,982 - GFF2413 0.52 -0.8 61,003 + GFF2413 0.65 +0.4 61,003 + GFF2413 0.65 +0.4 61,098 - -0.3 61,337 - -1.4 61,402 + +0.3 61,402 + -0.4 61,418 - +0.1 61,418 - -0.5 61,418 - -0.4 61,418 - +0.8 61,461 + -0.0 61,462 - +0.1 61,462 - +0.4 61,462 - -1.0
Or see this region's nucleotide sequence