Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2288

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,172,525	-				+0.4
1,172,944	+		GFF2287	0.52	-0.2
1,172,944	+		GFF2287	0.52	+1.8
1,172,944	+		GFF2287	0.52	-0.3
1,172,945	-		GFF2287	0.52	-0.6
1,172,945	-		GFF2287	0.52	+0.2
1,172,989	+		GFF2287	0.57	+0.2
1,172,990	-		GFF2287	0.57	+0.7
1,172,990	-		GFF2287	0.57	+0.0
1,173,025	+		GFF2287	0.61	-0.9
1,173,452	+				-0.4
1,173,452	+				-0.1
1,173,452	+				+0.7
1,173,452	+				+1.3
1,173,452	+				-1.1
1,173,452	+				-0.9
1,173,453	-				+0.3
1,173,453	-				-0.1
1,173,453	-				-2.1
1,173,453	-				-0.1
1,173,453	-				-0.4
1,173,453	-				+0.7
1,173,796	+		GFF2288	0.20	+0.1
1,173,826	+		GFF2288	0.22	-1.3
1,173,967	+		GFF2288	0.30	-0.0
1,173,967	+		GFF2288	0.30	-0.1
1,173,967	+		GFF2288	0.30	+0.0
1,173,967	+		GFF2288	0.30	-0.6
1,173,967	+		GFF2288	0.30	-0.0
1,173,986	-		GFF2288	0.31	+0.0
1,174,054	+		GFF2288	0.35	+0.2
1,174,072	+		GFF2288	0.37	-0.5
1,174,073	-		GFF2288	0.37	-0.9
1,174,135	+		GFF2288	0.40	-0.9
1,174,135	+		GFF2288	0.40	-0.1
1,174,136	-		GFF2288	0.40	+1.1
1,174,136	-		GFF2288	0.40	+1.8
1,174,136	-		GFF2288	0.40	-0.3
1,174,136	-		GFF2288	0.40	-0.5
1,174,136	-		GFF2288	0.40	-0.3
1,174,292	-		GFF2288	0.50	+0.4
1,174,345	+		GFF2288	0.53	-1.2
1,174,345	+		GFF2288	0.53	-0.0
1,174,346	-		GFF2288	0.53	-0.2
1,174,504	+		GFF2288	0.63	+1.5
1,174,504	+		GFF2288	0.63	-0.8
1,174,504	+		GFF2288	0.63	-0.8
1,174,505	-		GFF2288	0.63	+0.9
1,174,505	-		GFF2288	0.63	-1.6
1,174,505	-		GFF2288	0.63	-1.1
1,174,505	-		GFF2288	0.63	+0.9
1,174,762	+		GFF2288	0.78	+0.2
1,174,763	-		GFF2288	0.78	+0.1
1,174,763	-		GFF2288	0.78	+0.1
1,174,771	+		GFF2288	0.79	+0.1
1,174,771	+		GFF2288	0.79	+0.7
1,174,772	-		GFF2288	0.79	+0.1
1,174,772	-		GFF2288	0.79	+0.1
1,174,772	-		GFF2288	0.79	-0.7
1,174,772	-		GFF2288	0.79	-0.3
1,174,772	-		GFF2288	0.79	-0.9
1,174,772	-		GFF2288	0.79	+1.3
1,174,837	+		GFF2288	0.83	-0.5
1,174,838	-		GFF2288	0.83	+0.3
1,174,838	-		GFF2288	0.83	-0.1
1,174,838	-		GFF2288	0.83	-0.8
1,175,205	+				+1.0
1,175,206	-				-0.8
1,175,206	-				-0.1
1,175,322	+		GFF2289	0.22	+0.7
1,175,322	+		GFF2289	0.22	-0.2
1,175,331	+		GFF2289	0.23	+0.2
1,175,583	+		GFF2289	0.50	+0.4
1,175,877	+		GFF2289	0.81	+1.3
1,175,877	+		GFF2289	0.81	-0.4
1,175,878	-		GFF2289	0.81	-0.0
1,175,878	-		GFF2289	0.81	-0.7
1,175,878	-		GFF2289	0.81	+0.3
1,175,887	-		GFF2289	0.82	+0.1
1,175,919	+		GFF2289	0.86	-0.5