Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2245

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,128,600	+		GFF2244	0.44	+0.4
1,128,600	+		GFF2244	0.44	-0.5
1,128,784	-		GFF2244	0.63	-0.4
1,128,784	-		GFF2244	0.63	-0.4
1,129,356	+		GFF2245	0.22	-0.5
1,129,357	-		GFF2245	0.22	+0.3
1,129,357	-		GFF2245	0.22	-1.9
1,129,357	-		GFF2245	0.22	-0.2
1,129,431	+		GFF2245	0.30	-0.2
1,129,431	+		GFF2245	0.30	-0.2
1,129,432	-		GFF2245	0.30	+0.1
1,130,119	+				+0.7
1,130,139	-				-0.3
1,130,160	+				-0.3
1,130,177	+				+0.5
1,130,359	-		GFF2246	0.15	-0.6
1,130,359	-		GFF2246	0.15	-0.6
1,130,442	+		GFF2246	0.23	+0.3
1,130,461	-		GFF2246	0.25	-0.5
1,130,547	+		GFF2246	0.33	-1.6
1,130,548	-		GFF2246	0.33	-0.3
1,130,887	-		GFF2246	0.64	+0.2
1,130,887	-		GFF2246	0.64	-0.3
1,130,967	+		GFF2246	0.71	+0.1
1,130,967	+		GFF2246	0.71	+0.1
1,130,967	+		GFF2246	0.71	-1.1
1,130,967	+		GFF2246	0.71	-1.1
1,130,968	-		GFF2246	0.71	+0.2
1,130,968	-		GFF2246	0.71	-0.1
1,130,970	+		GFF2246	0.71	-1.9
1,130,970	+		GFF2246	0.71	-0.5
1,130,971	-		GFF2246	0.71	-0.3