Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2241

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,125,096	+		GFF2240	0.70	+0.5
1,125,097	-		GFF2240	0.70	-0.3
1,125,097	-		GFF2240	0.70	-0.1
1,125,358	+				-0.2
1,125,359	-				-0.3
1,125,359	-				+0.7
1,125,359	-				-0.4
1,125,359	-				+0.3
1,125,637	+		GFF2241	0.18	-0.1
1,125,775	+		GFF2241	0.26	-0.8
1,125,850	+		GFF2241	0.31	-0.5
1,125,850	+		GFF2241	0.31	-1.8
1,125,850	+		GFF2241	0.31	-0.5
1,125,850	+		GFF2241	0.31	-0.2
1,125,869	-		GFF2241	0.32	+0.2
1,125,940	+		GFF2241	0.37	+0.1
1,126,021	+		GFF2241	0.42	-1.5
1,126,183	+		GFF2241	0.52	-0.3
1,126,237	+		GFF2241	0.56	-0.3
1,126,238	-		GFF2241	0.56	-0.8
1,126,555	+		GFF2241	0.76	-0.8
1,126,556	-		GFF2241	0.76	-0.0
1,126,556	-		GFF2241	0.76	+0.3
1,126,687	+		GFF2241	0.84	+0.1
1,126,687	+		GFF2241	0.84	-0.1
1,126,687	+		GFF2241	0.84	+0.3
1,126,826	-				-0.4
1,126,826	-				-0.0
1,126,826	-				+1.3
1,127,155	+				+0.2
1,127,155	+				-0.0
1,127,156	-				-0.2
1,127,156	-				+1.1
1,127,157	+				-1.0
1,127,157	+				+0.5
1,127,158	-				-0.7
1,127,158	-				-0.0
1,127,655	+		GFF2243	0.48	+0.2
1,127,799	+		GFF2243	0.63	+0.1
1,127,799	+		GFF2243	0.63	+0.5
1,127,799	+		GFF2243	0.63	+1.2
1,127,800	-		GFF2243	0.63	+0.2