Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2194

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,083,093	+		GFF2193	0.39	+0.6
1,083,093	+		GFF2193	0.39	-0.2
1,083,094	-		GFF2193	0.39	-0.6
1,083,094	-		GFF2193	0.39	-0.6
1,083,094	-		GFF2193	0.39	-0.5
1,083,108	+		GFF2193	0.40	-0.6
1,083,108	+		GFF2193	0.40	-1.1
1,083,108	+		GFF2193	0.40	+0.3
1,083,108	+		GFF2193	0.40	-0.2
1,083,108	+		GFF2193	0.40	-0.8
1,083,255	+		GFF2193	0.50	-0.6
1,083,291	+		GFF2193	0.52	-0.5
1,083,291	+		GFF2193	0.52	-1.1
1,083,291	+		GFF2193	0.52	-0.1
1,083,291	+		GFF2193	0.52	+0.3
1,083,292	-		GFF2193	0.52	-0.4
1,083,292	-		GFF2193	0.52	+0.2
1,083,292	-		GFF2193	0.52	+0.1
1,083,292	-		GFF2193	0.52	-0.1
1,083,292	-		GFF2193	0.52	-1.4
1,083,292	-		GFF2193	0.52	+0.1
1,083,358	-		GFF2193	0.57	-0.0
1,083,438	+		GFF2193	0.62	-1.1
1,083,438	+		GFF2193	0.62	+0.6
1,083,439	-		GFF2193	0.62	-1.9
1,083,571	-		GFF2193	0.71	-0.3
1,083,573	+		GFF2193	0.71	-0.0
1,083,573	+		GFF2193	0.71	-0.2
1,083,573	+		GFF2193	0.71	+0.0
1,083,574	-		GFF2193	0.71	-0.7
1,083,574	-		GFF2193	0.71	+0.2
1,083,594	+		GFF2193	0.73	-0.3
1,083,594	+		GFF2193	0.73	+0.3
1,083,594	+		GFF2193	0.73	-0.2
1,083,594	+		GFF2193	0.73	-0.1
1,083,595	-		GFF2193	0.73	+0.0
1,083,595	-		GFF2193	0.73	-0.3
1,083,943	-				-0.0
1,083,943	-				-0.9
1,083,967	-				+0.1
1,084,111	-		GFF2194	0.20	-1.6
1,084,129	-		GFF2194	0.24	-0.7
1,084,176	+		GFF2194	0.35	-0.1
1,084,176	+		GFF2194	0.35	-1.6
1,084,176	+		GFF2194	0.35	-1.1
1,084,176	+		GFF2194	0.35	-0.3
1,084,177	-		GFF2194	0.35	+0.9
1,084,189	-		GFF2194	0.38	+0.3
1,084,272	+		GFF2194	0.56	-0.4
1,084,272	+		GFF2194	0.56	+1.3
1,084,404	+		GFF2194	0.85	-0.3
1,084,405	-		GFF2194	0.86	+1.1
1,084,496	+				-0.3
1,084,496	+				-1.6
1,084,497	-				+0.5
1,084,838	+		GFF2195	0.36	+0.1
1,084,839	-		GFF2195	0.36	-0.6
1,084,893	-		GFF2195	0.41	-0.5
1,084,970	+		GFF2195	0.49	+0.1
1,084,970	+		GFF2195	0.49	-1.0
1,084,970	+		GFF2195	0.49	-0.2
1,084,971	-		GFF2195	0.49	-0.8
1,084,974	-		GFF2195	0.50	-0.2
1,085,003	+		GFF2195	0.53	-0.1
1,085,082	-		GFF2195	0.61	-0.6
1,085,216	+		GFF2195	0.75	-2.4