Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2160

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
1,050,819	+		GFF2159	0.14	-0.0
1,050,819	+		GFF2159	0.14	+0.6
1,050,819	+		GFF2159	0.14	-0.1
1,050,819	+		GFF2159	0.14	-0.6
1,050,819	+		GFF2159	0.14	-1.1
1,050,820	-		GFF2159	0.14	+0.7
1,050,822	+		GFF2159	0.15	+0.1
1,050,822	+		GFF2159	0.15	-0.5
1,050,822	+		GFF2159	0.15	-0.2
1,050,823	-		GFF2159	0.15	-0.3
1,050,823	-		GFF2159	0.15	+0.9
1,050,891	+		GFF2159	0.21	-1.0
1,050,891	+		GFF2159	0.21	+0.9
1,050,891	+		GFF2159	0.21	-0.3
1,051,395	+		GFF2159	0.66	-0.5
1,051,396	-		GFF2159	0.66	-0.5
1,051,482	+		GFF2159	0.73	-0.2
1,051,482	+		GFF2159	0.73	-0.8
1,051,561	-		GFF2159	0.80	+0.5
1,051,764	+				+0.8
1,051,764	+				-0.5
1,051,765	-				-0.0
1,051,765	-				-0.2
1,051,765	-				-0.1
1,051,765	-				-0.2
1,051,765	-				-1.7
1,051,801	+				+0.7
1,052,085	+		GFF2160	0.26	+2.4
1,052,086	-		GFF2160	0.26	-1.0
1,052,969	+		GFF2161	0.14	+0.2
1,052,970	-		GFF2161	0.14	-0.5
1,052,975	+		GFF2161	0.14	-0.4
1,052,975	+		GFF2161	0.14	+0.0
1,052,976	-		GFF2161	0.14	-1.3
1,052,976	-		GFF2161	0.14	-0.6
1,052,976	-		GFF2161	0.14	-0.6
1,052,976	-		GFF2161	0.14	-0.4
1,053,624	-		GFF2161	0.86	-0.0
1,053,624	-		GFF2161	0.86	+0.5
1,053,722	+				-0.5
1,053,723	-				+0.1
1,053,723	-				-0.0
1,053,723	-				-0.3
1,053,811	+				+0.1