Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2090 and GFF2091 are separated by 122 nucleotides GFF2091 and GFF2092 overlap by 4 nucleotides GFF2092 and GFF2093 are separated by 25 nucleotides
GFF2090 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 974,340 to 976,328
GFF2090
GFF2091 - hypothetical protein, at 976,451 to 976,582
GFF2091
GFF2092 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 976,579 to 980,115
GFF2092
GFF2093 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 980,141 to 981,169
GFF2093
Position (kb) 976
977
978
979
980
981 Strain fitness (log2 ratio) -2
-1
0
1 at 975.649 kb on - strand, within GFF2090 at 975.651 kb on - strand, within GFF2090 at 975.760 kb on - strand, within GFF2090 at 975.760 kb on - strand, within GFF2090 at 976.128 kb on + strand, within GFF2090 at 976.129 kb on - strand, within GFF2090 at 976.206 kb on + strand at 976.206 kb on + strand at 976.206 kb on + strand at 976.206 kb on + strand at 976.207 kb on - strand at 976.221 kb on + strand at 976.222 kb on - strand at 976.772 kb on + strand at 977.042 kb on + strand, within GFF2092 at 977.043 kb on - strand, within GFF2092 at 977.043 kb on - strand, within GFF2092 at 977.058 kb on - strand, within GFF2092 at 977.528 kb on + strand, within GFF2092 at 977.529 kb on - strand, within GFF2092 at 977.835 kb on - strand, within GFF2092 at 977.835 kb on - strand, within GFF2092 at 978.383 kb on + strand, within GFF2092 at 978.384 kb on - strand, within GFF2092 at 978.512 kb on + strand, within GFF2092 at 978.512 kb on + strand, within GFF2092 at 978.512 kb on + strand, within GFF2092 at 978.513 kb on - strand, within GFF2092 at 978.525 kb on - strand, within GFF2092 at 979.226 kb on + strand, within GFF2092 at 979.226 kb on + strand, within GFF2092 at 979.226 kb on + strand, within GFF2092 at 979.227 kb on - strand, within GFF2092 at 979.227 kb on - strand, within GFF2092 at 979.229 kb on + strand, within GFF2092 at 979.229 kb on + strand, within GFF2092 at 979.419 kb on - strand, within GFF2092 at 979.419 kb on - strand, within GFF2092 at 979.419 kb on - strand, within GFF2092 at 980.042 kb on + strand at 980.410 kb on - strand, within GFF2093 at 980.425 kb on - strand, within GFF2093 at 980.446 kb on - strand, within GFF2093 at 980.749 kb on - strand, within GFF2093 at 980.749 kb on - strand, within GFF2093 at 980.805 kb on + strand, within GFF2093 at 980.805 kb on + strand, within GFF2093
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 975,649 - GFF2090 0.66 -0.7 975,651 - GFF2090 0.66 -0.3 975,760 - GFF2090 0.71 -0.8 975,760 - GFF2090 0.71 -0.2 976,128 + GFF2090 0.90 +0.1 976,129 - GFF2090 0.90 -0.0 976,206 + -0.2 976,206 + -0.8 976,206 + -0.0 976,206 + +0.3 976,207 - +0.7 976,221 + +0.5 976,222 - -0.8 976,772 + -0.5 977,042 + GFF2092 0.13 -1.4 977,043 - GFF2092 0.13 +1.1 977,043 - GFF2092 0.13 -1.2 977,058 - GFF2092 0.14 -0.2 977,528 + GFF2092 0.27 -1.0 977,529 - GFF2092 0.27 -0.2 977,835 - GFF2092 0.36 -0.1 977,835 - GFF2092 0.36 -0.6 978,383 + GFF2092 0.51 +0.2 978,384 - GFF2092 0.51 -1.0 978,512 + GFF2092 0.55 +0.2 978,512 + GFF2092 0.55 -0.5 978,512 + GFF2092 0.55 +0.7 978,513 - GFF2092 0.55 +1.1 978,525 - GFF2092 0.55 -0.9 979,226 + GFF2092 0.75 -1.0 979,226 + GFF2092 0.75 -0.3 979,226 + GFF2092 0.75 +0.2 979,227 - GFF2092 0.75 -2.5 979,227 - GFF2092 0.75 -0.0 979,229 + GFF2092 0.75 +0.9 979,229 + GFF2092 0.75 -0.2 979,419 - GFF2092 0.80 +1.0 979,419 - GFF2092 0.80 +0.5 979,419 - GFF2092 0.80 -0.7 980,042 + -0.3 980,410 - GFF2093 0.26 +0.5 980,425 - GFF2093 0.28 -0.9 980,446 - GFF2093 0.30 -0.3 980,749 - GFF2093 0.59 +0.3 980,749 - GFF2093 0.59 -0.5 980,805 + GFF2093 0.65 -0.6 980,805 + GFF2093 0.65 +0.1
Or see this region's nucleotide sequence