Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2087

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
970,639	+		GFF2085	0.53	+0.4
970,639	+		GFF2085	0.53	+0.5
970,640	-		GFF2085	0.54	-0.4
970,640	-		GFF2085	0.54	+2.2
970,640	-		GFF2085	0.54	+0.1
970,640	-		GFF2085	0.54	-0.1
971,156	+				+0.0
971,156	+				-0.4
971,156	+				+0.0
971,156	+				-0.0
971,157	-				+0.8
971,157	-				+0.9
971,362	-				-0.0
971,410	+				+0.3
971,411	-				-0.4
971,411	-				+0.2
971,583	-				+0.1
971,789	+		GFF2087	0.20	-1.0
971,789	+		GFF2087	0.20	-0.3
971,789	+		GFF2087	0.20	+0.9
971,790	-		GFF2087	0.20	+0.5
971,790	-		GFF2087	0.20	+0.1
971,830	+		GFF2087	0.25	-0.8
971,831	-		GFF2087	0.25	-0.5
972,539	+				-0.3
972,540	-				-2.2
972,733	+				-0.9
972,733	+				-0.9
972,733	+				-0.4
972,734	-				-0.1
972,734	-				-0.3
972,734	-				-0.0
972,740	-				+1.0
972,779	+				-0.3
972,779	+				+0.0
972,787	+				-0.2
972,787	+				+0.4
972,788	-				-0.5
972,871	+				-0.2
972,871	+				-0.3
972,925	+				-0.2
972,925	+				+0.5
972,926	-				-0.3
972,926	-				-0.7
972,974	+				-0.3
972,974	+				-0.7
972,975	-				+0.0
973,142	+				+1.1
973,143	-				-1.7
973,143	-				+0.5
973,162	-				-0.7
973,258	+		GFF2088	0.43	+0.3
973,264	+		GFF2088	0.46	+0.6
973,264	+		GFF2088	0.46	-0.7
973,264	+		GFF2088	0.46	-0.8
973,265	-		GFF2088	0.47	+0.8
973,265	-		GFF2088	0.47	-0.5
973,265	-		GFF2088	0.47	+0.9
973,265	-		GFF2088	0.47	+0.6
973,265	-		GFF2088	0.47	-0.3
973,374	+				-0.2