Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2020 and GFF2021 are separated by 477 nucleotides GFF2021 and GFF2022 overlap by 4 nucleotides
GFF2020 - hypothetical protein, at 895,526 to 896,221
GFF2020
GFF2021 - FIG00977539: hypothetical protein, at 896,699 to 898,087
GFF2021
GFF2022 - membrane protein, putative, at 898,084 to 900,654
GFF2022
Position (kb) 896
897
898
899 Strain fitness (log2 ratio) -1
0
1 at 895.743 kb on + strand, within GFF2020 at 895.743 kb on + strand, within GFF2020 at 895.743 kb on + strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.744 kb on - strand, within GFF2020 at 895.768 kb on - strand, within GFF2020 at 895.828 kb on - strand, within GFF2020 at 896.499 kb on - strand at 896.739 kb on + strand at 896.739 kb on + strand at 896.739 kb on + strand at 896.739 kb on + strand at 896.740 kb on - strand at 896.751 kb on - strand at 896.835 kb on + strand at 896.836 kb on - strand at 896.963 kb on + strand, within GFF2021 at 896.963 kb on + strand, within GFF2021 at 896.963 kb on + strand, within GFF2021 at 896.964 kb on - strand, within GFF2021 at 896.964 kb on - strand, within GFF2021 at 897.147 kb on + strand, within GFF2021 at 897.148 kb on - strand, within GFF2021 at 897.148 kb on - strand, within GFF2021 at 897.590 kb on + strand, within GFF2021 at 897.667 kb on - strand, within GFF2021 at 897.714 kb on + strand, within GFF2021 at 897.714 kb on + strand, within GFF2021 at 897.714 kb on + strand, within GFF2021 at 897.715 kb on - strand, within GFF2021 at 897.732 kb on + strand, within GFF2021 at 897.951 kb on + strand at 897.951 kb on + strand at 897.952 kb on - strand at 897.952 kb on - strand at 897.952 kb on - strand at 897.952 kb on - strand at 898.178 kb on + strand at 898.238 kb on + strand at 898.238 kb on + strand at 898.238 kb on + strand at 898.238 kb on + strand at 898.239 kb on - strand at 898.349 kb on + strand, within GFF2022 at 898.350 kb on - strand, within GFF2022 at 898.350 kb on - strand, within GFF2022 at 898.367 kb on + strand, within GFF2022 at 898.368 kb on - strand, within GFF2022 at 898.368 kb on - strand, within GFF2022 at 898.368 kb on - strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.535 kb on + strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.536 kb on - strand, within GFF2022 at 898.796 kb on + strand, within GFF2022 at 898.796 kb on + strand, within GFF2022 at 898.796 kb on + strand, within GFF2022 at 898.797 kb on - strand, within GFF2022 at 898.826 kb on + strand, within GFF2022 at 898.826 kb on + strand, within GFF2022 at 898.827 kb on - strand, within GFF2022 at 898.827 kb on - strand, within GFF2022 at 898.827 kb on - strand, within GFF2022 at 898.827 kb on - strand, within GFF2022 at 898.827 kb on - strand, within GFF2022 at 898.827 kb on - strand, within GFF2022 at 898.916 kb on + strand, within GFF2022 at 898.916 kb on + strand, within GFF2022 at 898.916 kb on + strand, within GFF2022 at 898.917 kb on - strand, within GFF2022 at 898.917 kb on - strand, within GFF2022 at 898.917 kb on - strand, within GFF2022
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 895,743 + GFF2020 0.31 -0.4 895,743 + GFF2020 0.31 -0.4 895,743 + GFF2020 0.31 -0.3 895,744 - GFF2020 0.31 -0.0 895,744 - GFF2020 0.31 -0.0 895,744 - GFF2020 0.31 -0.1 895,744 - GFF2020 0.31 +0.2 895,744 - GFF2020 0.31 -1.1 895,744 - GFF2020 0.31 +0.2 895,744 - GFF2020 0.31 -1.0 895,744 - GFF2020 0.31 +0.7 895,744 - GFF2020 0.31 -0.0 895,744 - GFF2020 0.31 -0.3 895,744 - GFF2020 0.31 -0.9 895,744 - GFF2020 0.31 -1.6 895,744 - GFF2020 0.31 -0.4 895,744 - GFF2020 0.31 -0.2 895,744 - GFF2020 0.31 +0.5 895,744 - GFF2020 0.31 +0.2 895,744 - GFF2020 0.31 +0.6 895,768 - GFF2020 0.35 +0.5 895,828 - GFF2020 0.43 -0.5 896,499 - -0.4 896,739 + +0.1 896,739 + +1.3 896,739 + -0.2 896,739 + -0.4 896,740 - +0.0 896,751 - -0.3 896,835 + -0.1 896,836 - +0.6 896,963 + GFF2021 0.19 +0.6 896,963 + GFF2021 0.19 +0.1 896,963 + GFF2021 0.19 -0.2 896,964 - GFF2021 0.19 -0.1 896,964 - GFF2021 0.19 +0.4 897,147 + GFF2021 0.32 +0.1 897,148 - GFF2021 0.32 -0.9 897,148 - GFF2021 0.32 -0.2 897,590 + GFF2021 0.64 +0.1 897,667 - GFF2021 0.70 -0.2 897,714 + GFF2021 0.73 -0.1 897,714 + GFF2021 0.73 +0.2 897,714 + GFF2021 0.73 -0.5 897,715 - GFF2021 0.73 -0.4 897,732 + GFF2021 0.74 -0.3 897,951 + -0.2 897,951 + +0.2 897,952 - +0.4 897,952 - -0.3 897,952 - -0.7 897,952 - +0.0 898,178 + +0.6 898,238 + -0.0 898,238 + -0.3 898,238 + +0.1 898,238 + -1.4 898,239 - -0.3 898,349 + GFF2022 0.10 -1.4 898,350 - GFF2022 0.10 +0.6 898,350 - GFF2022 0.10 +1.1 898,367 + GFF2022 0.11 +0.3 898,368 - GFF2022 0.11 -0.3 898,368 - GFF2022 0.11 +0.3 898,368 - GFF2022 0.11 +0.2 898,535 + GFF2022 0.18 -0.1 898,535 + GFF2022 0.18 +0.1 898,535 + GFF2022 0.18 -0.2 898,535 + GFF2022 0.18 +0.1 898,535 + GFF2022 0.18 +0.2 898,535 + GFF2022 0.18 +1.2 898,535 + GFF2022 0.18 -0.8 898,535 + GFF2022 0.18 -1.0 898,535 + GFF2022 0.18 -0.4 898,535 + GFF2022 0.18 +0.2 898,536 - GFF2022 0.18 +0.1 898,536 - GFF2022 0.18 +1.0 898,536 - GFF2022 0.18 -1.2 898,536 - GFF2022 0.18 -1.0 898,536 - GFF2022 0.18 +0.5 898,536 - GFF2022 0.18 -0.8 898,536 - GFF2022 0.18 -0.1 898,536 - GFF2022 0.18 -0.0 898,536 - GFF2022 0.18 -0.9 898,796 + GFF2022 0.28 -0.4 898,796 + GFF2022 0.28 +0.5 898,796 + GFF2022 0.28 +0.2 898,797 - GFF2022 0.28 +0.8 898,826 + GFF2022 0.29 -0.1 898,826 + GFF2022 0.29 +0.6 898,827 - GFF2022 0.29 -0.5 898,827 - GFF2022 0.29 -0.6 898,827 - GFF2022 0.29 +0.0 898,827 - GFF2022 0.29 +0.0 898,827 - GFF2022 0.29 -0.1 898,827 - GFF2022 0.29 -0.0 898,916 + GFF2022 0.32 +1.2 898,916 + GFF2022 0.32 +0.3 898,916 + GFF2022 0.32 +0.1 898,917 - GFF2022 0.32 +0.3 898,917 - GFF2022 0.32 -0.2 898,917 - GFF2022 0.32 -0.1
Or see this region's nucleotide sequence