Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1 and GFF2 are separated by 6 nucleotides GFF2 and GFF3 are separated by 347 nucleotides
GFF1 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 4 to 183
GFF1
GFF2 - hypothetical protein, at 190 to 966
GFF2
GFF3 - hypothetical protein, at 1,314 to 1,637
GFF3
Position (kb) 0
1 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.236 kb on + strand at 0.236 kb on + strand at 0.236 kb on + strand at 0.237 kb on + strand at 0.279 kb on - strand, within GFF2 at 0.341 kb on + strand, within GFF2 at 0.341 kb on + strand, within GFF2 at 0.342 kb on - strand, within GFF2 at 0.342 kb on - strand, within GFF2 at 0.389 kb on + strand, within GFF2 at 0.389 kb on + strand, within GFF2 at 0.390 kb on - strand, within GFF2 at 0.390 kb on - strand, within GFF2 at 0.390 kb on - strand, within GFF2 at 0.390 kb on - strand, within GFF2 at 0.993 kb on + strand at 0.993 kb on + strand at 0.993 kb on + strand at 0.993 kb on + strand at 0.993 kb on + strand at 0.994 kb on - strand at 0.994 kb on - strand at 0.994 kb on - strand at 0.994 kb on - strand at 1.149 kb on + strand at 1.149 kb on + strand at 1.150 kb on - strand at 1.150 kb on - strand at 1.390 kb on + strand, within GFF3 at 1.390 kb on + strand, within GFF3 at 1.391 kb on - strand, within GFF3 at 1.407 kb on + strand, within GFF3 at 1.407 kb on + strand, within GFF3 at 1.407 kb on + strand, within GFF3 at 1.408 kb on - strand, within GFF3 at 1.408 kb on - strand, within GFF3 at 1.408 kb on - strand, within GFF3 at 1.408 kb on - strand, within GFF3 at 1.408 kb on - strand, within GFF3 at 1.476 kb on + strand, within GFF3 at 1.476 kb on + strand, within GFF3 at 1.509 kb on + strand, within GFF3 at 1.509 kb on + strand, within GFF3 at 1.509 kb on + strand, within GFF3 at 1.509 kb on + strand, within GFF3 at 1.510 kb on - strand, within GFF3 at 1.510 kb on - strand, within GFF3 at 1.510 kb on - strand, within GFF3 at 1.510 kb on - strand, within GFF3 at 1.510 kb on - strand, within GFF3 at 1.510 kb on - strand, within GFF3 at 1.510 kb on - strand, within GFF3 at 1.560 kb on + strand, within GFF3 at 1.561 kb on - strand, within GFF3 at 1.561 kb on - strand, within GFF3 at 1.561 kb on - strand, within GFF3 at 1.786 kb on + strand at 1.787 kb on - strand at 1.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 236 + +0.0 236 + +0.1 236 + -1.1 237 + -0.7 279 - GFF2 0.11 +0.3 341 + GFF2 0.19 -0.7 341 + GFF2 0.19 -0.4 342 - GFF2 0.20 +0.1 342 - GFF2 0.20 +0.2 389 + GFF2 0.26 -0.4 389 + GFF2 0.26 -0.6 390 - GFF2 0.26 -0.4 390 - GFF2 0.26 -0.2 390 - GFF2 0.26 -0.1 390 - GFF2 0.26 -1.2 993 + -0.0 993 + +0.1 993 + -0.7 993 + -0.5 993 + -0.8 994 - +0.4 994 - -0.4 994 - +0.3 994 - -0.1 1,149 + -0.2 1,149 + +0.5 1,150 - -0.1 1,150 - -0.0 1,390 + GFF3 0.23 -0.1 1,390 + GFF3 0.23 -0.3 1,391 - GFF3 0.24 +0.1 1,407 + GFF3 0.29 -0.9 1,407 + GFF3 0.29 -0.3 1,407 + GFF3 0.29 -0.0 1,408 - GFF3 0.29 -0.5 1,408 - GFF3 0.29 +0.4 1,408 - GFF3 0.29 +0.1 1,408 - GFF3 0.29 -1.3 1,408 - GFF3 0.29 -0.6 1,476 + GFF3 0.50 -1.4 1,476 + GFF3 0.50 +1.0 1,509 + GFF3 0.60 -0.8 1,509 + GFF3 0.60 -1.8 1,509 + GFF3 0.60 -0.2 1,509 + GFF3 0.60 -0.8 1,510 - GFF3 0.60 +1.5 1,510 - GFF3 0.60 -0.8 1,510 - GFF3 0.60 -0.2 1,510 - GFF3 0.60 -0.7 1,510 - GFF3 0.60 -1.7 1,510 - GFF3 0.60 -0.9 1,510 - GFF3 0.60 -0.5 1,560 + GFF3 0.76 -0.3 1,561 - GFF3 0.76 +2.4 1,561 - GFF3 0.76 +0.7 1,561 - GFF3 0.76 -0.5 1,786 + +0.1 1,787 - +0.1 1,871 - -1.1
Or see this region's nucleotide sequence