Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1949 and GFF1950 are separated by 98 nucleotides GFF1950 and GFF1951 are separated by 4 nucleotides GFF1951 and GFF1952 are separated by 215 nucleotides
GFF1949 - Sensory box histidine kinase, at 822,126 to 823,340
GFF1949
GFF1950 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 823,439 to 824,020
GFF1950
GFF1951 - Integral membrane protein TerC, at 824,025 to 824,972
GFF1951
GFF1952 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), at 825,188 to 826,288
GFF1952
Position (kb) 824
825 Strain fitness (log2 ratio) -2
-1
0
1
2 at 823.580 kb on + strand, within GFF1950 at 823.580 kb on + strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.958 kb on + strand, within GFF1950 at 823.958 kb on + strand, within GFF1950 at 823.958 kb on + strand, within GFF1950 at 823.958 kb on + strand, within GFF1950 at 823.959 kb on - strand, within GFF1950 at 823.959 kb on - strand, within GFF1950 at 824.113 kb on + strand at 824.113 kb on + strand at 824.113 kb on + strand at 824.113 kb on + strand at 824.113 kb on + strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.134 kb on + strand, within GFF1951 at 824.170 kb on + strand, within GFF1951 at 824.170 kb on + strand, within GFF1951 at 824.170 kb on + strand, within GFF1951 at 824.259 kb on + strand, within GFF1951 at 824.259 kb on + strand, within GFF1951 at 824.259 kb on + strand, within GFF1951 at 824.259 kb on + strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.510 kb on + strand, within GFF1951 at 824.536 kb on + strand, within GFF1951 at 824.537 kb on - strand, within GFF1951 at 824.537 kb on - strand, within GFF1951 at 824.537 kb on - strand, within GFF1951 at 824.537 kb on - strand, within GFF1951 at 824.662 kb on + strand, within GFF1951 at 824.662 kb on + strand, within GFF1951 at 824.663 kb on - strand, within GFF1951 at 824.663 kb on - strand, within GFF1951 at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.069 kb on - strand at 825.069 kb on - strand at 825.069 kb on - strand at 825.069 kb on - strand at 825.069 kb on - strand at 825.069 kb on - strand at 825.069 kb on - strand at 825.124 kb on + strand at 825.124 kb on + strand at 825.124 kb on + strand at 825.124 kb on + strand at 825.124 kb on + strand at 825.125 kb on - strand at 825.125 kb on - strand at 825.125 kb on - strand at 825.125 kb on - strand at 825.149 kb on + strand at 825.149 kb on + strand at 825.210 kb on + strand at 825.210 kb on + strand at 825.210 kb on + strand at 825.210 kb on + strand at 825.210 kb on - strand at 825.211 kb on - strand at 825.211 kb on - strand at 825.211 kb on - strand at 825.211 kb on - strand at 825.216 kb on + strand at 825.216 kb on + strand at 825.217 kb on - strand at 825.217 kb on - strand at 825.217 kb on - strand at 825.217 kb on - strand at 825.217 kb on - strand at 825.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 823,580 + GFF1950 0.24 +0.3 823,580 + GFF1950 0.24 +0.3 823,581 - GFF1950 0.24 +0.6 823,581 - GFF1950 0.24 -0.2 823,581 - GFF1950 0.24 -1.0 823,581 - GFF1950 0.24 +0.6 823,581 - GFF1950 0.24 -0.9 823,581 - GFF1950 0.24 +0.1 823,581 - GFF1950 0.24 -0.3 823,958 + GFF1950 0.89 +1.1 823,958 + GFF1950 0.89 -0.2 823,958 + GFF1950 0.89 -1.2 823,958 + GFF1950 0.89 +0.4 823,959 - GFF1950 0.89 +0.4 823,959 - GFF1950 0.89 -0.6 824,113 + +0.1 824,113 + -0.2 824,113 + +2.0 824,113 + +0.7 824,113 + -0.8 824,114 - -0.6 824,114 - +0.2 824,114 - +0.3 824,114 - +0.5 824,114 - +0.2 824,114 - -0.1 824,114 - +0.1 824,114 - +0.2 824,114 - +0.3 824,134 + GFF1951 0.11 +0.0 824,170 + GFF1951 0.15 +0.1 824,170 + GFF1951 0.15 -0.1 824,170 + GFF1951 0.15 -1.0 824,259 + GFF1951 0.25 -1.2 824,259 + GFF1951 0.25 -0.5 824,259 + GFF1951 0.25 +0.2 824,259 + GFF1951 0.25 -0.6 824,260 - GFF1951 0.25 -0.4 824,260 - GFF1951 0.25 +0.6 824,260 - GFF1951 0.25 +0.6 824,260 - GFF1951 0.25 -0.5 824,260 - GFF1951 0.25 -0.3 824,510 + GFF1951 0.51 +0.2 824,536 + GFF1951 0.54 -1.3 824,537 - GFF1951 0.54 +1.0 824,537 - GFF1951 0.54 +0.9 824,537 - GFF1951 0.54 -0.4 824,537 - GFF1951 0.54 -1.2 824,662 + GFF1951 0.67 -0.0 824,662 + GFF1951 0.67 -0.9 824,663 - GFF1951 0.67 +0.4 824,663 - GFF1951 0.67 -0.1 825,068 + -0.3 825,068 + -0.6 825,068 + +0.3 825,068 + +0.1 825,068 + -2.3 825,068 + +0.6 825,068 + +0.4 825,068 + +0.6 825,068 + -0.0 825,068 + +1.1 825,068 + +0.4 825,069 - -0.6 825,069 - +1.1 825,069 - -1.0 825,069 - -0.1 825,069 - -0.0 825,069 - -1.4 825,069 - +0.1 825,124 + +0.7 825,124 + -0.0 825,124 + -0.1 825,124 + -0.5 825,124 + -0.2 825,125 - -0.0 825,125 - -0.1 825,125 - +0.3 825,125 - -0.9 825,149 + -0.7 825,149 + +0.1 825,210 + +0.0 825,210 + +0.3 825,210 + +0.2 825,210 + +0.7 825,210 - -0.2 825,211 - +0.6 825,211 - -0.4 825,211 - -0.0 825,211 - -0.6 825,216 + +0.1 825,216 + +1.3 825,217 - -0.0 825,217 - +0.2 825,217 - -0.4 825,217 - -0.1 825,217 - +0.5 825,217 - -0.6
Or see this region's nucleotide sequence