Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1877 and GFF1878 are separated by 18 nucleotides GFF1878 and GFF1879 are separated by 10 nucleotides
GFF1877 - probable MFS transporter, at 740,925 to 742,127
GFF1877
GFF1878 - TRAP-type C4-dicarboxylate transport system, small permease component, at 742,146 to 742,655
GFF1878
GFF1879 - TRAP-type C4-dicarboxylate transport system, large permease component, at 742,666 to 743,967
GFF1879
Position (kb) 742
743 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 741.283 kb on + strand, within GFF1877 at 741.284 kb on - strand, within GFF1877 at 741.693 kb on + strand, within GFF1877 at 741.693 kb on + strand, within GFF1877 at 741.693 kb on + strand, within GFF1877 at 741.694 kb on - strand, within GFF1877 at 741.862 kb on - strand, within GFF1877 at 741.862 kb on - strand, within GFF1877 at 742.135 kb on + strand at 742.180 kb on + strand at 742.180 kb on + strand at 742.180 kb on + strand at 742.181 kb on - strand at 742.181 kb on - strand at 742.181 kb on - strand at 742.230 kb on + strand, within GFF1878 at 742.329 kb on + strand, within GFF1878 at 742.329 kb on + strand, within GFF1878 at 742.329 kb on + strand, within GFF1878 at 742.329 kb on + strand, within GFF1878 at 742.329 kb on + strand, within GFF1878 at 742.329 kb on + strand, within GFF1878 at 742.329 kb on + strand, within GFF1878 at 742.329 kb on + strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.330 kb on - strand, within GFF1878 at 742.419 kb on + strand, within GFF1878 at 742.419 kb on + strand, within GFF1878 at 742.419 kb on + strand, within GFF1878 at 742.420 kb on - strand, within GFF1878 at 742.420 kb on - strand, within GFF1878 at 742.420 kb on - strand, within GFF1878 at 742.768 kb on + strand at 742.769 kb on - strand at 742.841 kb on - strand, within GFF1879 at 742.841 kb on - strand, within GFF1879 at 742.867 kb on - strand, within GFF1879 at 743.048 kb on - strand, within GFF1879 at 743.242 kb on + strand, within GFF1879 at 743.242 kb on + strand, within GFF1879 at 743.242 kb on + strand, within GFF1879 at 743.242 kb on + strand, within GFF1879 at 743.242 kb on + strand, within GFF1879 at 743.243 kb on - strand, within GFF1879 at 743.243 kb on - strand, within GFF1879 at 743.243 kb on - strand, within GFF1879 at 743.243 kb on - strand, within GFF1879 at 743.243 kb on - strand, within GFF1879 at 743.243 kb on - strand, within GFF1879 at 743.243 kb on - strand, within GFF1879 at 743.254 kb on + strand, within GFF1879 at 743.254 kb on + strand, within GFF1879 at 743.254 kb on + strand, within GFF1879 at 743.255 kb on - strand, within GFF1879 at 743.255 kb on - strand, within GFF1879 at 743.545 kb on + strand, within GFF1879 at 743.545 kb on + strand, within GFF1879 at 743.545 kb on + strand, within GFF1879 at 743.545 kb on + strand, within GFF1879 at 743.545 kb on + strand, within GFF1879 at 743.545 kb on + strand, within GFF1879 at 743.546 kb on - strand, within GFF1879
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 741,283 + GFF1877 0.30 -0.2 741,284 - GFF1877 0.30 -0.1 741,693 + GFF1877 0.64 +0.6 741,693 + GFF1877 0.64 -0.6 741,693 + GFF1877 0.64 +0.4 741,694 - GFF1877 0.64 +1.3 741,862 - GFF1877 0.78 -0.7 741,862 - GFF1877 0.78 -0.0 742,135 + +0.2 742,180 + -0.8 742,180 + -0.4 742,180 + -1.3 742,181 - -0.9 742,181 - +0.7 742,181 - -0.3 742,230 + GFF1878 0.16 -1.3 742,329 + GFF1878 0.36 -0.2 742,329 + GFF1878 0.36 -0.7 742,329 + GFF1878 0.36 -0.2 742,329 + GFF1878 0.36 +0.3 742,329 + GFF1878 0.36 -0.4 742,329 + GFF1878 0.36 -0.7 742,329 + GFF1878 0.36 -0.6 742,329 + GFF1878 0.36 -0.3 742,330 - GFF1878 0.36 +0.6 742,330 - GFF1878 0.36 +0.6 742,330 - GFF1878 0.36 +0.8 742,330 - GFF1878 0.36 -0.4 742,330 - GFF1878 0.36 +0.1 742,330 - GFF1878 0.36 -0.1 742,330 - GFF1878 0.36 -1.6 742,330 - GFF1878 0.36 +0.8 742,330 - GFF1878 0.36 -0.2 742,330 - GFF1878 0.36 +0.3 742,330 - GFF1878 0.36 -0.2 742,330 - GFF1878 0.36 +0.2 742,330 - GFF1878 0.36 +0.4 742,419 + GFF1878 0.54 +0.1 742,419 + GFF1878 0.54 -0.0 742,419 + GFF1878 0.54 -0.1 742,420 - GFF1878 0.54 -0.4 742,420 - GFF1878 0.54 -1.6 742,420 - GFF1878 0.54 +0.3 742,768 + -0.0 742,769 - -0.2 742,841 - GFF1879 0.13 +0.1 742,841 - GFF1879 0.13 +0.2 742,867 - GFF1879 0.15 -0.4 743,048 - GFF1879 0.29 +0.4 743,242 + GFF1879 0.44 -0.4 743,242 + GFF1879 0.44 +0.3 743,242 + GFF1879 0.44 +2.3 743,242 + GFF1879 0.44 +0.9 743,242 + GFF1879 0.44 +0.1 743,243 - GFF1879 0.44 +0.1 743,243 - GFF1879 0.44 +0.6 743,243 - GFF1879 0.44 +0.5 743,243 - GFF1879 0.44 +0.1 743,243 - GFF1879 0.44 -1.6 743,243 - GFF1879 0.44 +0.3 743,243 - GFF1879 0.44 +0.4 743,254 + GFF1879 0.45 -0.7 743,254 + GFF1879 0.45 +0.8 743,254 + GFF1879 0.45 -1.0 743,255 - GFF1879 0.45 -0.1 743,255 - GFF1879 0.45 -1.2 743,545 + GFF1879 0.68 +0.2 743,545 + GFF1879 0.68 -0.2 743,545 + GFF1879 0.68 +0.6 743,545 + GFF1879 0.68 -0.4 743,545 + GFF1879 0.68 -3.1 743,545 + GFF1879 0.68 +1.3 743,546 - GFF1879 0.68 -0.2
Or see this region's nucleotide sequence