Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1865

Experiment: Ying_OrganicAcid7 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1863 and GFF1864 overlap by 4 nucleotidesGFF1864 and GFF1865 are separated by 5 nucleotidesGFF1865 and GFF1866 are separated by 298 nucleotides GFF1863 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 726,491 to 727,435 GFF1863 GFF1864 - Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-), at 727,432 to 727,992 GFF1864 GFF1865 - UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-), at 727,998 to 729,953 GFF1865 GFF1866 - periplasmic sensor signal transduction histidine kinase, at 730,252 to 731,505 GFF1866 Position (kb) 727 728 729 730Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 727.543 kb on + strand, within GFF1864at 727.543 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.657 kb on + strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.658 kb on - strand, within GFF1864at 727.903 kb on + strand, within GFF1864at 727.903 kb on + strand, within GFF1864at 727.903 kb on + strand, within GFF1864at 727.903 kb on + strand, within GFF1864at 727.904 kb on - strand, within GFF1864at 727.904 kb on - strand, within GFF1864at 727.941 kb on - strandat 727.941 kb on - strandat 727.990 kb on + strandat 728.244 kb on + strand, within GFF1865at 728.244 kb on + strand, within GFF1865at 728.245 kb on - strand, within GFF1865at 728.292 kb on + strand, within GFF1865at 728.292 kb on + strand, within GFF1865at 728.292 kb on + strand, within GFF1865at 728.292 kb on + strand, within GFF1865at 728.292 kb on + strand, within GFF1865at 728.293 kb on - strand, within GFF1865at 728.293 kb on - strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.304 kb on + strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.305 kb on - strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.362 kb on + strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.363 kb on - strand, within GFF1865at 728.415 kb on + strand, within GFF1865at 728.416 kb on - strand, within GFF1865at 728.416 kb on - strand, within GFF1865at 728.433 kb on + strand, within GFF1865at 728.433 kb on + strand, within GFF1865at 728.434 kb on - strand, within GFF1865at 728.478 kb on + strand, within GFF1865at 728.478 kb on + strand, within GFF1865at 728.478 kb on + strand, within GFF1865at 728.478 kb on + strand, within GFF1865at 728.478 kb on + strand, within GFF1865at 728.478 kb on + strand, within GFF1865at 728.478 kb on + strand, within GFF1865at 728.479 kb on - strand, within GFF1865at 728.479 kb on - strand, within GFF1865at 728.479 kb on - strand, within GFF1865at 728.479 kb on - strand, within GFF1865at 728.479 kb on - strand, within GFF1865at 728.479 kb on - strand, within GFF1865at 728.479 kb on - strand, within GFF1865at 728.605 kb on - strand, within GFF1865at 728.605 kb on - strand, within GFF1865at 728.605 kb on - strand, within GFF1865at 728.605 kb on - strand, within GFF1865at 728.605 kb on - strand, within GFF1865at 728.605 kb on - strand, within GFF1865at 729.123 kb on + strand, within GFF1865at 729.124 kb on - strand, within GFF1865at 729.124 kb on - strand, within GFF1865at 729.138 kb on + strand, within GFF1865at 729.138 kb on + strand, within GFF1865at 729.138 kb on + strand, within GFF1865at 729.139 kb on - strand, within GFF1865at 729.480 kb on + strand, within GFF1865at 729.480 kb on + strand, within GFF1865at 729.480 kb on + strand, within GFF1865at 729.480 kb on + strand, within GFF1865at 729.480 kb on + strand, within GFF1865at 729.481 kb on - strand, within GFF1865at 729.481 kb on - strand, within GFF1865at 729.628 kb on + strand, within GFF1865at 729.629 kb on - strand, within GFF1865at 729.629 kb on - strand, within GFF1865at 729.629 kb on - strand, within GFF1865at 729.629 kb on - strand, within GFF1865at 729.629 kb on - strand, within GFF1865at 729.629 kb on - strand, within GFF1865at 729.629 kb on - strand, within GFF1865at 729.699 kb on + strand, within GFF1865at 729.699 kb on + strand, within GFF1865at 729.699 kb on + strand, within GFF1865at 729.700 kb on - strand, within GFF1865at 729.700 kb on - strand, within GFF1865at 729.879 kb on + strandat 729.879 kb on + strandat 729.880 kb on - strandat 729.880 kb on - strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.039 kb on + strandat 730.040 kb on - strandat 730.040 kb on - strandat 730.040 kb on - strandat 730.040 kb on - strandat 730.040 kb on - strandat 730.040 kb on - strandat 730.040 kb on - strandat 730.040 kb on - strandat 730.040 kb on - strandat 730.040 kb on - strandat 730.040 kb on - strandat 730.040 kb on - strandat 730.040 kb on - strandat 730.140 kb on - strandat 730.156 kb on + strandat 730.156 kb on + strandat 730.156 kb on + strandat 730.157 kb on - strandat 730.157 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1
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727,543 + GFF1864 0.20 -6.1
727,543 + GFF1864 0.20 -2.6
727,657 + GFF1864 0.40 -2.0
727,657 + GFF1864 0.40 -1.2
727,657 + GFF1864 0.40 -4.5
727,657 + GFF1864 0.40 -2.9
727,657 + GFF1864 0.40 -1.2
727,657 + GFF1864 0.40 -4.3
727,657 + GFF1864 0.40 -3.5
727,658 - GFF1864 0.40 -2.5
727,658 - GFF1864 0.40 -6.0
727,658 - GFF1864 0.40 -2.7
727,658 - GFF1864 0.40 -3.0
727,658 - GFF1864 0.40 -2.5
727,658 - GFF1864 0.40 -3.7
727,658 - GFF1864 0.40 -2.9
727,658 - GFF1864 0.40 -2.9
727,658 - GFF1864 0.40 -1.6
727,658 - GFF1864 0.40 -2.1
727,903 + GFF1864 0.84 -1.6
727,903 + GFF1864 0.84 -2.7
727,903 + GFF1864 0.84 -0.4
727,903 + GFF1864 0.84 -2.8
727,904 - GFF1864 0.84 -2.6
727,904 - GFF1864 0.84 -4.7
727,941 - -3.4
727,941 - -2.6
727,990 + +0.0
728,244 + GFF1865 0.13 -2.2
728,244 + GFF1865 0.13 -2.7
728,245 - GFF1865 0.13 -4.7
728,292 + GFF1865 0.15 -5.2
728,292 + GFF1865 0.15 -7.0
728,292 + GFF1865 0.15 -2.7
728,292 + GFF1865 0.15 -3.0
728,292 + GFF1865 0.15 -5.4
728,293 - GFF1865 0.15 -5.4
728,293 - GFF1865 0.15 -1.0
728,304 + GFF1865 0.16 -2.6
728,304 + GFF1865 0.16 -3.4
728,304 + GFF1865 0.16 -2.7
728,304 + GFF1865 0.16 -3.8
728,304 + GFF1865 0.16 -4.4
728,304 + GFF1865 0.16 -2.9
728,304 + GFF1865 0.16 -3.1
728,304 + GFF1865 0.16 -3.6
728,304 + GFF1865 0.16 -2.8
728,304 + GFF1865 0.16 -2.3
728,304 + GFF1865 0.16 -6.3
728,304 + GFF1865 0.16 -6.5
728,304 + GFF1865 0.16 -3.6
728,304 + GFF1865 0.16 -5.2
728,305 - GFF1865 0.16 -4.2
728,305 - GFF1865 0.16 -3.5
728,305 - GFF1865 0.16 -1.0
728,305 - GFF1865 0.16 -3.1
728,305 - GFF1865 0.16 -3.1
728,305 - GFF1865 0.16 -2.9
728,305 - GFF1865 0.16 -1.7
728,305 - GFF1865 0.16 -3.7
728,305 - GFF1865 0.16 +0.6
728,305 - GFF1865 0.16 -5.9
728,305 - GFF1865 0.16 -0.0
728,305 - GFF1865 0.16 -1.4
728,305 - GFF1865 0.16 -4.4
728,305 - GFF1865 0.16 -2.8
728,305 - GFF1865 0.16 -4.4
728,362 + GFF1865 0.19 -5.1
728,362 + GFF1865 0.19 -7.3
728,362 + GFF1865 0.19 -2.6
728,362 + GFF1865 0.19 -5.8
728,362 + GFF1865 0.19 -1.7
728,362 + GFF1865 0.19 -3.6
728,362 + GFF1865 0.19 -2.3
728,362 + GFF1865 0.19 -2.2
728,362 + GFF1865 0.19 -3.2
728,362 + GFF1865 0.19 -3.1
728,362 + GFF1865 0.19 -1.1
728,363 - GFF1865 0.19 -0.8
728,363 - GFF1865 0.19 +0.4
728,363 - GFF1865 0.19 -1.5
728,363 - GFF1865 0.19 +0.6
728,363 - GFF1865 0.19 -0.2
728,363 - GFF1865 0.19 -1.0
728,363 - GFF1865 0.19 +0.8
728,363 - GFF1865 0.19 -1.2
728,363 - GFF1865 0.19 -1.2
728,363 - GFF1865 0.19 -0.9
728,363 - GFF1865 0.19 -2.3
728,415 + GFF1865 0.21 -3.0
728,416 - GFF1865 0.21 -2.4
728,416 - GFF1865 0.21 -2.4
728,433 + GFF1865 0.22 -4.2
728,433 + GFF1865 0.22 -4.3
728,434 - GFF1865 0.22 -3.4
728,478 + GFF1865 0.25 -4.6
728,478 + GFF1865 0.25 -2.7
728,478 + GFF1865 0.25 -3.8
728,478 + GFF1865 0.25 -3.9
728,478 + GFF1865 0.25 -4.8
728,478 + GFF1865 0.25 -6.6
728,478 + GFF1865 0.25 -3.3
728,479 - GFF1865 0.25 -1.6
728,479 - GFF1865 0.25 -2.9
728,479 - GFF1865 0.25 -0.7
728,479 - GFF1865 0.25 -3.8
728,479 - GFF1865 0.25 -1.2
728,479 - GFF1865 0.25 -3.6
728,479 - GFF1865 0.25 -5.0
728,605 - GFF1865 0.31 -0.7
728,605 - GFF1865 0.31 -3.0
728,605 - GFF1865 0.31 -4.8
728,605 - GFF1865 0.31 -4.0
728,605 - GFF1865 0.31 -2.9
728,605 - GFF1865 0.31 -2.9
729,123 + GFF1865 0.58 -4.2
729,124 - GFF1865 0.58 -3.7
729,124 - GFF1865 0.58 -5.1
729,138 + GFF1865 0.58 -3.1
729,138 + GFF1865 0.58 -1.2
729,138 + GFF1865 0.58 -2.9
729,139 - GFF1865 0.58 -4.6
729,480 + GFF1865 0.76 -3.1
729,480 + GFF1865 0.76 -3.9
729,480 + GFF1865 0.76 -2.5
729,480 + GFF1865 0.76 -3.7
729,480 + GFF1865 0.76 -0.7
729,481 - GFF1865 0.76 -2.3
729,481 - GFF1865 0.76 -4.3
729,628 + GFF1865 0.83 -2.4
729,629 - GFF1865 0.83 -2.5
729,629 - GFF1865 0.83 -4.6
729,629 - GFF1865 0.83 -4.0
729,629 - GFF1865 0.83 -3.8
729,629 - GFF1865 0.83 -2.6
729,629 - GFF1865 0.83 -2.3
729,629 - GFF1865 0.83 -1.2
729,699 + GFF1865 0.87 -3.7
729,699 + GFF1865 0.87 -3.9
729,699 + GFF1865 0.87 -1.6
729,700 - GFF1865 0.87 -2.2
729,700 - GFF1865 0.87 -4.7
729,879 + -0.1
729,879 + +0.7
729,880 - +0.4
729,880 - -0.6
730,039 + -0.0
730,039 + +0.0
730,039 + +0.3
730,039 + -2.1
730,039 + +0.0
730,039 + -0.1
730,039 + -0.1
730,039 + +1.0
730,039 + +0.2
730,039 + +2.9
730,039 + -0.4
730,039 + +0.6
730,039 + -0.1
730,039 + +0.0
730,039 + +0.3
730,040 - +0.4
730,040 - -0.0
730,040 - -0.3
730,040 - -0.6
730,040 - -0.5
730,040 - -1.6
730,040 - +0.5
730,040 - +0.2
730,040 - -2.0
730,040 - +0.7
730,040 - +1.0
730,040 - -0.1
730,040 - -0.0
730,140 - -0.6
730,156 + +0.7
730,156 + +0.0
730,156 + +0.7
730,157 - +0.6
730,157 - -0.1

Or see this region's nucleotide sequence