Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1761 and GFF1762 are separated by 53 nucleotides GFF1762 and GFF1763 overlap by 27 nucleotides GFF1763 and GFF1764 are separated by 2 nucleotides GFF1764 and GFF1765 are separated by 36 nucleotides
GFF1761 - Related to two-component system sensory/regulatory protein, at 624,648 to 626,972
GFF1761
GFF1762 - hypothetical protein, at 627,026 to 627,211
GFF1762
GFF1763 - Phosphoglycerate mutase family protein, at 627,185 to 627,868
GFF1763
GFF1764 - Creatinine amidohydrolase (EC 3.5.2.10), at 627,871 to 628,713
GFF1764
GFF1765 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 628,750 to 629,496
GFF1765
Position (kb) 627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 626.566 kb on + strand, within GFF1761 at 626.885 kb on - strand at 627.016 kb on + strand at 627.016 kb on + strand at 627.016 kb on + strand at 627.016 kb on + strand at 627.016 kb on + strand at 627.016 kb on + strand at 627.017 kb on - strand at 627.017 kb on - strand at 627.017 kb on - strand at 627.017 kb on - strand at 627.027 kb on + strand at 627.197 kb on + strand at 627.197 kb on + strand at 627.197 kb on + strand at 627.239 kb on + strand at 627.425 kb on + strand, within GFF1763 at 627.426 kb on - strand, within GFF1763 at 627.506 kb on + strand, within GFF1763 at 627.507 kb on - strand, within GFF1763 at 627.507 kb on - strand, within GFF1763 at 627.507 kb on - strand, within GFF1763 at 627.587 kb on + strand, within GFF1763 at 627.588 kb on - strand, within GFF1763 at 627.588 kb on - strand, within GFF1763 at 627.588 kb on - strand, within GFF1763 at 627.734 kb on + strand, within GFF1763 at 627.809 kb on + strand at 627.809 kb on + strand at 627.809 kb on + strand at 627.810 kb on - strand at 627.810 kb on - strand at 627.810 kb on - strand at 627.810 kb on - strand at 627.860 kb on + strand at 627.860 kb on + strand at 627.860 kb on + strand at 627.860 kb on + strand at 627.861 kb on - strand at 627.861 kb on - strand at 627.861 kb on - strand at 627.872 kb on + strand at 627.873 kb on - strand at 627.873 kb on - strand at 628.034 kb on + strand, within GFF1764 at 628.034 kb on + strand, within GFF1764 at 628.035 kb on - strand, within GFF1764 at 628.035 kb on - strand, within GFF1764 at 628.035 kb on - strand, within GFF1764 at 628.035 kb on - strand, within GFF1764 at 628.289 kb on + strand, within GFF1764 at 628.289 kb on + strand, within GFF1764 at 628.290 kb on - strand, within GFF1764 at 628.487 kb on + strand, within GFF1764 at 628.724 kb on + strand at 628.724 kb on + strand at 628.724 kb on + strand at 628.724 kb on + strand at 628.724 kb on + strand at 628.724 kb on + strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.725 kb on - strand at 628.738 kb on + strand at 628.739 kb on - strand at 628.780 kb on + strand at 628.780 kb on + strand at 628.780 kb on + strand at 628.781 kb on - strand at 628.781 kb on - strand at 628.805 kb on + strand at 628.806 kb on - strand at 628.852 kb on + strand, within GFF1765
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 626,566 + GFF1761 0.82 -2.1 626,885 - +1.0 627,016 + -0.5 627,016 + -0.3 627,016 + -0.3 627,016 + +0.1 627,016 + +0.3 627,016 + +0.9 627,017 - -2.6 627,017 - -0.4 627,017 - +0.1 627,017 - -0.1 627,027 + +0.4 627,197 + +1.0 627,197 + -0.3 627,197 + -1.3 627,239 + -1.4 627,425 + GFF1763 0.35 -0.0 627,426 - GFF1763 0.35 -0.2 627,506 + GFF1763 0.47 -0.1 627,507 - GFF1763 0.47 +1.2 627,507 - GFF1763 0.47 -0.1 627,507 - GFF1763 0.47 +0.7 627,587 + GFF1763 0.59 -0.9 627,588 - GFF1763 0.59 +1.1 627,588 - GFF1763 0.59 +0.1 627,588 - GFF1763 0.59 +0.7 627,734 + GFF1763 0.80 +0.8 627,809 + +0.1 627,809 + -0.2 627,809 + +0.0 627,810 - +0.6 627,810 - -0.4 627,810 - +1.1 627,810 - +0.7 627,860 + -0.8 627,860 + +0.6 627,860 + -0.8 627,860 + -0.1 627,861 - -0.2 627,861 - -0.1 627,861 - -0.4 627,872 + +0.4 627,873 - +0.1 627,873 - +0.0 628,034 + GFF1764 0.19 +0.1 628,034 + GFF1764 0.19 +0.2 628,035 - GFF1764 0.19 -1.2 628,035 - GFF1764 0.19 -1.4 628,035 - GFF1764 0.19 -1.5 628,035 - GFF1764 0.19 -2.8 628,289 + GFF1764 0.50 -0.8 628,289 + GFF1764 0.50 -1.0 628,290 - GFF1764 0.50 -2.0 628,487 + GFF1764 0.73 -1.2 628,724 + +0.3 628,724 + -0.2 628,724 + +0.1 628,724 + +0.6 628,724 + -0.5 628,724 + +0.4 628,725 - -0.1 628,725 - -0.2 628,725 - -0.1 628,725 - +0.5 628,725 - -0.9 628,725 - +1.0 628,725 - -0.7 628,725 - +0.3 628,738 + +0.6 628,739 - -0.7 628,780 + +1.1 628,780 + +1.1 628,780 + +0.2 628,781 - -0.9 628,781 - -1.1 628,805 + +1.3 628,806 - +0.1 628,852 + GFF1765 0.14 -0.2
Or see this region's nucleotide sequence