Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1644

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
498,511	-		GFF1643	0.39	+0.9
498,541	-		GFF1643	0.41	+0.2
498,565	-		GFF1643	0.43	+1.0
498,658	-		GFF1643	0.50	+0.9
498,744	+		GFF1643	0.56	-0.1
498,745	-		GFF1643	0.56	+0.2
498,900	+		GFF1643	0.67	-0.1
499,005	+		GFF1643	0.74	-0.9
499,317	+				-0.2
499,318	-				-2.0
499,549	+		GFF1644	0.18	-0.6
499,550	-		GFF1644	0.18	+0.5
499,570	+		GFF1644	0.20	+0.4
499,570	+		GFF1644	0.20	-0.1
499,570	+		GFF1644	0.20	-0.6
499,862	-		GFF1644	0.51	+0.3
499,894	+		GFF1644	0.55	+1.2
500,285	-				+1.5
500,285	-				+0.0
500,355	+				-0.6
500,400	+				-0.2
500,401	-				-0.4
500,402	+				+0.0
500,413	+				+0.0
500,413	+				+0.3
500,450	-				-0.8
500,450	-				+1.0
500,464	+				-0.5
500,482	+				-1.2
500,483	-				+0.5
500,949	-		GFF1645	0.30	+0.5
500,966	+		GFF1645	0.31	+0.2
500,966	+		GFF1645	0.31	-0.2