Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1392 and GFF1393 are separated by 2 nucleotides GFF1393 and GFF1394 are separated by 87 nucleotides
GFF1392 - General secretion pathway protein F / Type II secretory pathway, component PulF, at 247,562 to 248,791
GFF1392
GFF1393 - 5'-nucleotidase (EC 3.1.3.5), at 248,794 to 249,693
GFF1393
GFF1394 - ABC transporter, fused ATPase and inner membrane subunits (EC 3.6.3.27), at 249,781 to 251,574
GFF1394
Position (kb) 248
249
250 Strain fitness (log2 ratio) -2
-1
0
1 at 247.970 kb on + strand, within GFF1392 at 247.970 kb on + strand, within GFF1392 at 247.970 kb on + strand, within GFF1392 at 247.970 kb on + strand, within GFF1392 at 247.970 kb on + strand, within GFF1392 at 247.971 kb on - strand, within GFF1392 at 247.971 kb on - strand, within GFF1392 at 248.091 kb on - strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.145 kb on - strand, within GFF1392 at 248.145 kb on - strand, within GFF1392 at 248.145 kb on - strand, within GFF1392 at 248.244 kb on - strand, within GFF1392 at 248.244 kb on - strand, within GFF1392 at 248.244 kb on - strand, within GFF1392 at 248.244 kb on - strand, within GFF1392 at 248.378 kb on + strand, within GFF1392 at 248.379 kb on - strand, within GFF1392 at 248.899 kb on + strand, within GFF1393 at 248.899 kb on + strand, within GFF1393 at 248.899 kb on + strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 248.900 kb on - strand, within GFF1393 at 249.073 kb on + strand, within GFF1393 at 249.074 kb on - strand, within GFF1393 at 249.074 kb on - strand, within GFF1393 at 249.127 kb on + strand, within GFF1393 at 249.220 kb on + strand, within GFF1393 at 249.220 kb on + strand, within GFF1393 at 249.221 kb on - strand, within GFF1393 at 249.221 kb on - strand, within GFF1393 at 249.692 kb on - strand at 249.859 kb on + strand at 249.860 kb on - strand at 249.934 kb on + strand at 249.934 kb on + strand at 249.935 kb on - strand at 249.935 kb on - strand at 249.935 kb on - strand at 249.935 kb on - strand at 249.973 kb on + strand, within GFF1394 at 249.973 kb on + strand, within GFF1394 at 250.048 kb on + strand, within GFF1394 at 250.048 kb on + strand, within GFF1394 at 250.049 kb on - strand, within GFF1394 at 250.049 kb on - strand, within GFF1394 at 250.049 kb on - strand, within GFF1394 at 250.066 kb on + strand, within GFF1394 at 250.066 kb on + strand, within GFF1394 at 250.067 kb on - strand, within GFF1394 at 250.075 kb on + strand, within GFF1394 at 250.075 kb on + strand, within GFF1394 at 250.126 kb on + strand, within GFF1394 at 250.126 kb on + strand, within GFF1394 at 250.126 kb on + strand, within GFF1394 at 250.126 kb on + strand, within GFF1394 at 250.127 kb on - strand, within GFF1394 at 250.127 kb on - strand, within GFF1394 at 250.127 kb on - strand, within GFF1394 at 250.127 kb on - strand, within GFF1394 at 250.159 kb on + strand, within GFF1394 at 250.255 kb on + strand, within GFF1394 at 250.256 kb on - strand, within GFF1394 at 250.256 kb on - strand, within GFF1394 at 250.396 kb on + strand, within GFF1394 at 250.397 kb on - strand, within GFF1394 at 250.397 kb on - strand, within GFF1394 at 250.420 kb on + strand, within GFF1394 at 250.621 kb on + strand, within GFF1394 at 250.621 kb on + strand, within GFF1394 at 250.622 kb on - strand, within GFF1394 at 250.622 kb on - strand, within GFF1394
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 247,970 + GFF1392 0.33 -0.6 247,970 + GFF1392 0.33 +0.1 247,970 + GFF1392 0.33 +0.1 247,970 + GFF1392 0.33 +0.8 247,970 + GFF1392 0.33 +0.4 247,971 - GFF1392 0.33 +0.5 247,971 - GFF1392 0.33 -0.4 248,091 - GFF1392 0.43 -1.5 248,144 + GFF1392 0.47 -0.1 248,144 + GFF1392 0.47 +0.2 248,144 + GFF1392 0.47 +0.5 248,144 + GFF1392 0.47 -0.4 248,144 + GFF1392 0.47 -0.1 248,145 - GFF1392 0.47 -1.1 248,145 - GFF1392 0.47 +0.1 248,145 - GFF1392 0.47 -0.3 248,244 - GFF1392 0.55 +0.7 248,244 - GFF1392 0.55 +1.2 248,244 - GFF1392 0.55 +0.5 248,244 - GFF1392 0.55 -2.2 248,378 + GFF1392 0.66 -0.1 248,379 - GFF1392 0.66 -0.8 248,899 + GFF1393 0.12 -1.3 248,899 + GFF1393 0.12 -0.9 248,899 + GFF1393 0.12 -1.1 248,900 - GFF1393 0.12 +0.5 248,900 - GFF1393 0.12 +0.3 248,900 - GFF1393 0.12 -0.0 248,900 - GFF1393 0.12 -0.5 248,900 - GFF1393 0.12 -0.2 248,900 - GFF1393 0.12 -0.8 248,900 - GFF1393 0.12 -0.3 249,073 + GFF1393 0.31 -0.3 249,074 - GFF1393 0.31 +0.1 249,074 - GFF1393 0.31 -0.1 249,127 + GFF1393 0.37 -0.5 249,220 + GFF1393 0.47 -0.4 249,220 + GFF1393 0.47 +0.1 249,221 - GFF1393 0.47 +0.5 249,221 - GFF1393 0.47 +0.4 249,692 - -0.9 249,859 + -0.3 249,860 - -0.3 249,934 + +0.6 249,934 + -0.1 249,935 - +0.3 249,935 - -1.5 249,935 - -0.5 249,935 - +0.3 249,973 + GFF1394 0.11 +0.2 249,973 + GFF1394 0.11 +0.7 250,048 + GFF1394 0.15 -1.1 250,048 + GFF1394 0.15 +0.0 250,049 - GFF1394 0.15 +0.2 250,049 - GFF1394 0.15 -0.5 250,049 - GFF1394 0.15 +0.0 250,066 + GFF1394 0.16 -0.4 250,066 + GFF1394 0.16 +0.7 250,067 - GFF1394 0.16 -0.3 250,075 + GFF1394 0.16 -1.5 250,075 + GFF1394 0.16 -0.4 250,126 + GFF1394 0.19 -0.8 250,126 + GFF1394 0.19 +0.7 250,126 + GFF1394 0.19 +0.2 250,126 + GFF1394 0.19 +0.0 250,127 - GFF1394 0.19 +0.5 250,127 - GFF1394 0.19 +0.1 250,127 - GFF1394 0.19 -1.1 250,127 - GFF1394 0.19 -0.7 250,159 + GFF1394 0.21 -1.1 250,255 + GFF1394 0.26 -0.5 250,256 - GFF1394 0.26 -0.3 250,256 - GFF1394 0.26 -0.0 250,396 + GFF1394 0.34 -1.4 250,397 - GFF1394 0.34 +0.4 250,397 - GFF1394 0.34 -0.5 250,420 + GFF1394 0.36 +0.2 250,621 + GFF1394 0.47 -0.2 250,621 + GFF1394 0.47 -0.7 250,622 - GFF1394 0.47 -0.0 250,622 - GFF1394 0.47 +0.6
Or see this region's nucleotide sequence