Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1341 and GFF1342 are separated by 177 nucleotides GFF1342 and GFF1343 overlap by 1 nucleotides GFF1343 and GFF1344 are separated by 62 nucleotides
GFF1341 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 193,830 to 195,119
GFF1341
GFF1342 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 195,297 to 196,079
GFF1342
GFF1343 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 196,079 to 196,789
GFF1343
GFF1344 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 196,852 to 198,045
GFF1344
Position (kb) 195
196
197 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 194.346 kb on + strand, within GFF1341 at 194.347 kb on - strand, within GFF1341 at 194.347 kb on - strand, within GFF1341 at 194.409 kb on + strand, within GFF1341 at 194.745 kb on + strand, within GFF1341 at 194.745 kb on + strand, within GFF1341 at 194.746 kb on - strand, within GFF1341 at 194.820 kb on + strand, within GFF1341 at 194.821 kb on - strand, within GFF1341 at 195.009 kb on + strand at 195.010 kb on - strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.208 kb on + strand at 195.209 kb on - strand at 195.209 kb on - strand at 195.209 kb on - strand at 195.209 kb on - strand at 195.210 kb on + strand at 195.210 kb on + strand at 195.211 kb on - strand at 195.645 kb on + strand, within GFF1342 at 195.645 kb on + strand, within GFF1342 at 195.645 kb on + strand, within GFF1342 at 195.646 kb on - strand, within GFF1342 at 195.646 kb on - strand, within GFF1342 at 195.759 kb on + strand, within GFF1342 at 195.759 kb on + strand, within GFF1342 at 195.760 kb on - strand, within GFF1342 at 195.999 kb on + strand, within GFF1342 at 195.999 kb on + strand, within GFF1342 at 195.999 kb on + strand, within GFF1342 at 196.038 kb on + strand at 196.038 kb on + strand at 196.038 kb on + strand at 196.038 kb on + strand at 196.038 kb on + strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.121 kb on + strand at 196.329 kb on - strand, within GFF1343 at 196.436 kb on + strand, within GFF1343 at 196.436 kb on + strand, within GFF1343 at 196.437 kb on - strand, within GFF1343 at 196.437 kb on - strand, within GFF1343 at 196.437 kb on - strand, within GFF1343 at 196.637 kb on + strand, within GFF1343 at 196.637 kb on + strand, within GFF1343 at 196.638 kb on - strand, within GFF1343 at 196.697 kb on + strand, within GFF1343 at 196.698 kb on - strand, within GFF1343 at 196.698 kb on - strand, within GFF1343 at 196.698 kb on - strand, within GFF1343 at 196.836 kb on + strand at 196.836 kb on + strand at 196.837 kb on - strand at 196.966 kb on + strand at 196.966 kb on + strand at 196.966 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 194,346 + GFF1341 0.40 -3.3 194,347 - GFF1341 0.40 -1.7 194,347 - GFF1341 0.40 -1.5 194,409 + GFF1341 0.45 -3.5 194,745 + GFF1341 0.71 -1.8 194,745 + GFF1341 0.71 -0.5 194,746 - GFF1341 0.71 -2.7 194,820 + GFF1341 0.77 -2.9 194,821 - GFF1341 0.77 -3.9 195,009 + -0.5 195,010 - -2.6 195,208 + -0.4 195,208 + -1.7 195,208 + -0.1 195,208 + -0.2 195,208 + -0.3 195,208 + +1.2 195,208 + -0.5 195,209 - -0.4 195,209 - +0.0 195,209 - +1.1 195,209 - +0.5 195,210 + -0.6 195,210 + +0.2 195,211 - +0.2 195,645 + GFF1342 0.44 -0.1 195,645 + GFF1342 0.44 -0.2 195,645 + GFF1342 0.44 -0.3 195,646 - GFF1342 0.45 -0.6 195,646 - GFF1342 0.45 +0.7 195,759 + GFF1342 0.59 -0.8 195,759 + GFF1342 0.59 -0.8 195,760 - GFF1342 0.59 +0.2 195,999 + GFF1342 0.90 -0.5 195,999 + GFF1342 0.90 -0.7 195,999 + GFF1342 0.90 -0.4 196,038 + +0.8 196,038 + -0.1 196,038 + -0.1 196,038 + -0.9 196,038 + -0.5 196,039 - +0.2 196,039 - +0.6 196,039 - -0.3 196,039 - -0.2 196,039 - +0.3 196,039 - -0.1 196,121 + +0.0 196,329 - GFF1343 0.35 +0.6 196,436 + GFF1343 0.50 +0.4 196,436 + GFF1343 0.50 -2.2 196,437 - GFF1343 0.50 +0.2 196,437 - GFF1343 0.50 -1.9 196,437 - GFF1343 0.50 +0.5 196,637 + GFF1343 0.78 +0.1 196,637 + GFF1343 0.78 -0.8 196,638 - GFF1343 0.79 -0.8 196,697 + GFF1343 0.87 +0.5 196,698 - GFF1343 0.87 -1.7 196,698 - GFF1343 0.87 -1.7 196,698 - GFF1343 0.87 -0.7 196,836 + -0.5 196,836 + -0.1 196,837 - -0.1 196,966 + +0.7 196,966 + +0.6 196,966 + -0.3
Or see this region's nucleotide sequence