Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1102 and GFF1103 are separated by 461 nucleotides
GFF1102 - DNA-binding heavy metal response regulator, at 27,285 to 27,971
GFF1102
GFF1103 - Outer membrane protein (porin), at 28,433 to 29,422
GFF1103
Position (kb) 27
28 Strain fitness (log2 ratio) -2
-1
0
1 at 26.333 kb on - strand at 26.353 kb on - strand at 26.353 kb on - strand at 26.381 kb on - strand at 26.465 kb on - strand at 26.630 kb on + strand at 26.631 kb on - strand at 26.821 kb on + strand at 26.821 kb on + strand at 26.821 kb on + strand at 26.822 kb on - strand at 26.887 kb on + strand at 26.887 kb on + strand at 26.888 kb on - strand at 26.888 kb on - strand at 26.888 kb on - strand at 27.023 kb on - strand at 27.119 kb on + strand at 27.119 kb on + strand at 27.120 kb on - strand at 27.120 kb on - strand at 27.120 kb on - strand at 27.120 kb on - strand at 27.120 kb on - strand at 27.120 kb on - strand at 27.120 kb on - strand at 27.169 kb on - strand at 27.169 kb on - strand at 27.176 kb on + strand at 27.191 kb on + strand at 27.192 kb on - strand at 27.310 kb on + strand at 27.311 kb on - strand at 27.311 kb on - strand at 27.311 kb on - strand at 27.582 kb on - strand, within GFF1102 at 27.682 kb on + strand, within GFF1102 at 27.682 kb on + strand, within GFF1102 at 27.682 kb on + strand, within GFF1102 at 27.683 kb on - strand, within GFF1102 at 27.723 kb on + strand, within GFF1102 at 27.724 kb on - strand, within GFF1102 at 27.822 kb on + strand, within GFF1102 at 27.936 kb on + strand at 27.936 kb on + strand at 28.052 kb on - strand at 28.052 kb on - strand at 28.295 kb on - strand at 28.389 kb on + strand at 28.389 kb on + strand at 28.395 kb on - strand at 28.395 kb on - strand at 28.395 kb on - strand at 28.430 kb on - strand at 28.435 kb on - strand at 28.495 kb on + strand at 28.495 kb on + strand at 28.496 kb on - strand at 28.496 kb on - strand at 28.496 kb on - strand at 28.531 kb on - strand at 28.533 kb on + strand, within GFF1103 at 28.534 kb on - strand, within GFF1103 at 28.534 kb on - strand, within GFF1103 at 28.539 kb on + strand, within GFF1103 at 28.539 kb on + strand, within GFF1103 at 28.540 kb on - strand, within GFF1103 at 28.540 kb on - strand, within GFF1103 at 28.566 kb on + strand, within GFF1103 at 28.567 kb on - strand, within GFF1103 at 28.617 kb on + strand, within GFF1103 at 28.747 kb on - strand, within GFF1103 at 28.780 kb on - strand, within GFF1103 at 28.824 kb on + strand, within GFF1103
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 26,333 - +0.1 26,353 - +0.6 26,353 - +0.1 26,381 - -0.4 26,465 - -0.1 26,630 + +0.3 26,631 - -0.1 26,821 + +1.0 26,821 + +0.7 26,821 + -1.1 26,822 - +0.2 26,887 + -0.1 26,887 + +0.2 26,888 - -0.3 26,888 - -1.3 26,888 - -0.4 27,023 - +0.4 27,119 + -1.3 27,119 + +0.1 27,120 - +0.3 27,120 - -0.5 27,120 - -0.8 27,120 - +0.6 27,120 - -2.2 27,120 - +0.8 27,120 - -0.4 27,169 - -0.4 27,169 - +0.6 27,176 + -0.4 27,191 + -0.5 27,192 - -1.3 27,310 + +1.2 27,311 - +0.1 27,311 - +0.3 27,311 - +0.2 27,582 - GFF1102 0.43 -0.3 27,682 + GFF1102 0.58 +0.5 27,682 + GFF1102 0.58 -0.9 27,682 + GFF1102 0.58 +0.0 27,683 - GFF1102 0.58 +0.0 27,723 + GFF1102 0.64 +0.5 27,724 - GFF1102 0.64 +0.4 27,822 + GFF1102 0.78 -0.1 27,936 + +0.2 27,936 + -1.4 28,052 - -0.6 28,052 - +0.1 28,295 - +0.3 28,389 + +0.7 28,389 + -0.0 28,395 - +0.7 28,395 - +1.0 28,395 - -1.4 28,430 - +0.2 28,435 - -0.5 28,495 + +1.1 28,495 + +0.2 28,496 - +0.4 28,496 - -0.3 28,496 - -1.2 28,531 - +0.7 28,533 + GFF1103 0.10 -0.0 28,534 - GFF1103 0.10 +0.5 28,534 - GFF1103 0.10 +0.0 28,539 + GFF1103 0.11 -0.1 28,539 + GFF1103 0.11 +0.4 28,540 - GFF1103 0.11 +0.4 28,540 - GFF1103 0.11 -0.6 28,566 + GFF1103 0.13 -1.0 28,567 - GFF1103 0.14 +0.5 28,617 + GFF1103 0.19 -0.2 28,747 - GFF1103 0.32 -0.3 28,780 - GFF1103 0.35 +0.0 28,824 + GFF1103 0.39 +0.4
Or see this region's nucleotide sequence