Experiment: Ying_OrganicAcid7 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1057 and GFF1058 are separated by 97 nucleotides GFF1058 and GFF1059 are separated by 45 nucleotides GFF1059 and GFF1060 are separated by 190 nucleotides
GFF1057 - hypothetical protein, at 797,745 to 798,143
GFF1057
GFF1058 - hypothetical protein, at 798,241 to 799,659
GFF1058
GFF1059 - hypothetical protein, at 799,705 to 800,004
GFF1059
GFF1060 - Adenylate cyclase (EC 4.6.1.1), at 800,195 to 801,736
GFF1060
Position (kb) 798
799
800 Strain fitness (log2 ratio) -2
-1
0
1 at 797.327 kb on + strand at 797.358 kb on - strand at 797.358 kb on - strand at 797.449 kb on + strand at 797.450 kb on - strand at 797.617 kb on + strand at 797.618 kb on - strand at 797.618 kb on - strand at 797.643 kb on + strand at 797.644 kb on - strand at 797.697 kb on + strand at 797.698 kb on - strand at 797.698 kb on - strand at 797.748 kb on + strand at 797.748 kb on + strand at 797.749 kb on - strand at 797.944 kb on + strand, within GFF1057 at 797.944 kb on + strand, within GFF1057 at 797.945 kb on - strand, within GFF1057 at 798.360 kb on - strand at 798.668 kb on + strand, within GFF1058 at 798.668 kb on + strand, within GFF1058 at 798.669 kb on - strand, within GFF1058 at 798.669 kb on - strand, within GFF1058 at 799.094 kb on + strand, within GFF1058 at 799.094 kb on + strand, within GFF1058 at 799.094 kb on + strand, within GFF1058 at 799.167 kb on - strand, within GFF1058 at 799.296 kb on + strand, within GFF1058 at 799.370 kb on + strand, within GFF1058 at 799.505 kb on + strand, within GFF1058 at 799.588 kb on - strand at 799.908 kb on - strand, within GFF1059 at 799.908 kb on - strand, within GFF1059 at 799.908 kb on - strand, within GFF1059 at 800.459 kb on + strand, within GFF1060 at 800.459 kb on + strand, within GFF1060 at 800.459 kb on + strand, within GFF1060 at 800.460 kb on - strand, within GFF1060
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 1 remove 797,327 + +0.5 797,358 - -0.2 797,358 - +0.4 797,449 + -0.6 797,450 - +0.4 797,617 + +0.6 797,618 - +0.1 797,618 - +0.2 797,643 + +0.0 797,644 - -1.9 797,697 + +0.6 797,698 - -0.3 797,698 - +0.9 797,748 + +0.4 797,748 + -0.5 797,749 - +0.0 797,944 + GFF1057 0.50 +1.1 797,944 + GFF1057 0.50 -0.3 797,945 - GFF1057 0.50 +0.7 798,360 - -0.0 798,668 + GFF1058 0.30 -0.6 798,668 + GFF1058 0.30 -0.2 798,669 - GFF1058 0.30 +0.4 798,669 - GFF1058 0.30 -0.2 799,094 + GFF1058 0.60 +0.2 799,094 + GFF1058 0.60 -0.7 799,094 + GFF1058 0.60 -1.6 799,167 - GFF1058 0.65 -0.2 799,296 + GFF1058 0.74 -1.9 799,370 + GFF1058 0.80 +0.5 799,505 + GFF1058 0.89 +0.1 799,588 - +0.4 799,908 - GFF1059 0.68 -0.8 799,908 - GFF1059 0.68 +0.3 799,908 - GFF1059 0.68 +0.2 800,459 + GFF1060 0.17 +0.6 800,459 + GFF1060 0.17 +1.4 800,459 + GFF1060 0.17 -0.4 800,460 - GFF1060 0.17 -0.5
Or see this region's nucleotide sequence