Strain Fitness in Escherichia fergusonii Becca around EFB2_04011

Experiment: BHIS_CaCl2 with hk phage cocktail 1 MOI

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 with hk phage cocktail 1 MOI
4,213,797	+		EFB2_04009	0.67	+1.0
4,213,904	+		EFB2_04009	0.80	-0.1
4,213,904	+		EFB2_04009	0.80	-3.0
4,213,904	+		EFB2_04009	0.80	+0.1
4,213,905	-		EFB2_04009	0.80	+0.7
4,213,905	-		EFB2_04009	0.80	+0.2
4,213,929	+		EFB2_04009	0.83	-0.5
4,213,940	+		EFB2_04009	0.85	-0.2
4,213,946	+		EFB2_04009	0.85	+0.1
4,213,946	+		EFB2_04009	0.85	+0.7
4,213,946	+		EFB2_04009	0.85	-0.3
4,213,946	+		EFB2_04009	0.85	-0.7
4,213,947	-		EFB2_04009	0.86	-1.4
4,213,947	-		EFB2_04009	0.86	+0.4
4,213,947	-		EFB2_04009	0.86	+0.8
4,213,948	+		EFB2_04009	0.86	-2.1
4,213,948	+		EFB2_04009	0.86	-0.5
4,213,948	+		EFB2_04009	0.86	-3.4
4,213,949	-		EFB2_04009	0.86	+0.5
4,213,949	-		EFB2_04009	0.86	+0.1
4,213,949	-		EFB2_04009	0.86	+0.2
4,213,949	-		EFB2_04009	0.86	-0.9
4,213,949	-		EFB2_04009	0.86	+0.5
4,213,973	+		EFB2_04009	0.89	+0.0
4,213,974	-		EFB2_04009	0.89	-0.7
4,213,974	-		EFB2_04009	0.89	-1.4
4,214,057	+				-0.5
4,214,071	+				-0.0
4,214,071	+				+0.5
4,214,071	+				+1.7
4,214,071	+				-1.6
4,214,071	+				+1.8
4,214,071	+				-0.0
4,214,071	+				+0.2
4,214,071	+				+0.3
4,214,071	+				-0.1
4,214,071	+				-1.2
4,214,071	+				+0.2
4,214,071	+				-0.8
4,214,071	+				+0.5
4,214,072	-				+0.0
4,214,072	-				-2.8
4,214,072	-				-0.2
4,214,072	-				-0.2
4,214,072	-				+1.3
4,214,072	-				+0.3
4,214,072	-				-1.5
4,214,072	-				-0.3
4,214,072	-				+0.2
4,214,072	-				+1.5
4,214,072	-				-0.7
4,214,072	-				-1.8
4,214,072	-				+0.8
4,214,072	-				+1.2
4,214,072	-				-1.4
4,214,072	-				+0.5
4,214,075	-				-0.4
4,214,090	+				-0.7
4,214,090	+				-1.4
4,214,091	-				+1.5
4,214,091	-				+0.4
4,214,135	+		EFB2_04010	0.12	+0.7
4,214,135	+		EFB2_04010	0.12	-0.7
4,214,136	-		EFB2_04010	0.12	+0.4
4,214,170	+		EFB2_04010	0.18	-1.4
4,214,170	+		EFB2_04010	0.18	-0.6
4,214,170	+		EFB2_04010	0.18	-0.7
4,214,170	+		EFB2_04010	0.18	+0.5
4,214,170	+		EFB2_04010	0.18	+0.7
4,214,170	+		EFB2_04010	0.18	-0.6
4,214,170	+		EFB2_04010	0.18	+2.6
4,214,170	+		EFB2_04010	0.18	-1.3
4,214,170	+		EFB2_04010	0.18	-0.3
4,214,170	+		EFB2_04010	0.18	+0.5
4,214,171	-		EFB2_04010	0.18	-0.3
4,214,171	-		EFB2_04010	0.18	+1.7
4,214,171	-		EFB2_04010	0.18	+0.1
4,214,171	-		EFB2_04010	0.18	+0.7
4,214,171	-		EFB2_04010	0.18	+0.6
4,214,203	+		EFB2_04010	0.23	-1.5
4,214,204	-		EFB2_04010	0.24	+1.5
4,214,235	+		EFB2_04010	0.29	-0.1
4,214,236	-		EFB2_04010	0.29	-2.8
4,214,253	+		EFB2_04010	0.32	+0.8
4,214,253	+		EFB2_04010	0.32	-0.2
4,214,253	+		EFB2_04010	0.32	-0.1
4,214,253	+		EFB2_04010	0.32	+0.5
4,214,253	+		EFB2_04010	0.32	+1.9
4,214,254	-		EFB2_04010	0.32	-0.9
4,214,254	-		EFB2_04010	0.32	-1.9
4,214,254	-		EFB2_04010	0.32	-0.2
4,214,254	-		EFB2_04010	0.32	-1.4
4,214,254	-		EFB2_04010	0.32	-1.9
4,214,264	-		EFB2_04010	0.34	+0.1
4,214,301	+		EFB2_04010	0.40	-0.2
4,214,301	+		EFB2_04010	0.40	-2.0
4,214,373	+		EFB2_04010	0.52	+0.5
4,214,373	+		EFB2_04010	0.52	+1.1
4,214,374	-		EFB2_04010	0.52	-0.5
4,214,486	+		EFB2_04010	0.71	+0.3
4,214,486	+		EFB2_04010	0.71	+0.0
4,214,487	-		EFB2_04010	0.71	+0.2
4,214,487	-		EFB2_04010	0.71	-0.1
4,214,539	+		EFB2_04010	0.80	-1.7
4,214,573	+		EFB2_04010	0.86	-0.4
4,214,573	+		EFB2_04010	0.86	-0.4
4,214,573	+		EFB2_04010	0.86	+3.1
4,214,573	+		EFB2_04010	0.86	+0.1
4,214,573	+		EFB2_04010	0.86	-1.4
4,214,573	+		EFB2_04010	0.86	-0.5
4,214,573	+		EFB2_04010	0.86	-2.0
4,214,573	+		EFB2_04010	0.86	+0.4
4,214,573	+		EFB2_04010	0.86	-1.1
4,214,573	+		EFB2_04010	0.86	-1.4
4,214,573	+		EFB2_04010	0.86	+0.0
4,214,574	-		EFB2_04010	0.86	+3.7
4,214,574	-		EFB2_04010	0.86	+0.5
4,214,574	-		EFB2_04010	0.86	-0.9
4,214,574	-		EFB2_04010	0.86	-1.0
4,214,574	-		EFB2_04010	0.86	-1.3
4,214,574	-		EFB2_04010	0.86	+1.1
4,214,574	-		EFB2_04010	0.86	-1.6
4,214,574	-		EFB2_04010	0.86	-0.3
4,214,653	+				-0.0
4,214,673	+				-2.5
4,214,697	+				+0.7
4,214,697	+				+0.1
4,214,697	+				-2.4
4,214,697	+				+0.1
4,214,708	+				-0.4
4,214,708	+				-1.0
4,214,708	+				+0.4
4,214,708	+				+0.4
4,214,709	-				+0.0
4,214,709	-				-0.8
4,214,718	-				+0.9
4,214,758	+				+0.4
4,214,758	+				-1.9
4,214,775	+				+0.1
4,214,785	+				-1.7
4,214,785	+				+0.2
4,214,785	+				+1.3
4,214,785	+				+0.5
4,214,785	+				-1.0
4,214,785	+				-0.1
4,214,785	+				-2.6
4,214,786	-				+1.2
4,214,786	-				+1.2
4,214,786	-				-0.5
4,214,786	-				-0.2
4,214,786	-				+0.0
4,214,786	-				-1.7
4,214,824	+		EFB2_04011	0.13	+1.1
4,214,824	+		EFB2_04011	0.13	+0.5
4,214,824	+		EFB2_04011	0.13	+0.6
4,214,868	-		EFB2_04011	0.24	+1.2
4,214,876	+		EFB2_04011	0.26	+0.6
4,214,876	+		EFB2_04011	0.26	-2.1
4,214,893	+		EFB2_04011	0.30	+1.0
4,214,894	-		EFB2_04011	0.30	+0.4
4,214,940	-		EFB2_04011	0.42	+0.8
4,214,940	-		EFB2_04011	0.42	-1.3
4,214,940	-		EFB2_04011	0.42	-1.4
4,214,977	+		EFB2_04011	0.51	+0.1
4,214,977	+		EFB2_04011	0.51	+1.6
4,214,978	-		EFB2_04011	0.52	-0.6
4,214,978	-		EFB2_04011	0.52	+2.1
4,214,978	-		EFB2_04011	0.52	-1.7
4,214,981	-		EFB2_04011	0.52	-0.1
4,214,992	+		EFB2_04011	0.55	-2.4
4,214,992	+		EFB2_04011	0.55	-0.6
4,214,992	+		EFB2_04011	0.55	-0.3
4,214,993	-		EFB2_04011	0.55	-0.9
4,214,993	-		EFB2_04011	0.55	-0.6
4,214,993	-		EFB2_04011	0.55	+0.3
4,215,005	+		EFB2_04011	0.58	-1.9
4,215,005	+		EFB2_04011	0.58	+0.4
4,215,006	-		EFB2_04011	0.59	-0.5
4,215,028	+		EFB2_04011	0.64	+1.5
4,215,028	+		EFB2_04011	0.64	-2.2
4,215,028	+		EFB2_04011	0.64	-0.6
4,215,028	+		EFB2_04011	0.64	+0.5
4,215,028	+		EFB2_04011	0.64	-0.7
4,215,028	+		EFB2_04011	0.64	+0.2
4,215,029	-		EFB2_04011	0.64	-0.9
4,215,029	-		EFB2_04011	0.64	+0.7
4,215,029	-		EFB2_04011	0.64	-0.5
4,215,029	-		EFB2_04011	0.64	+0.8
4,215,029	-		EFB2_04011	0.64	-0.7
4,215,029	-		EFB2_04011	0.64	+1.2
4,215,029	-		EFB2_04011	0.64	+0.4
4,215,029	-		EFB2_04011	0.64	+0.9
4,215,029	-		EFB2_04011	0.64	-0.9
4,215,029	-		EFB2_04011	0.64	-0.4
4,215,030	+		EFB2_04011	0.65	-1.3
4,215,030	+		EFB2_04011	0.65	-0.1
4,215,030	+		EFB2_04011	0.65	-0.2
4,215,030	+		EFB2_04011	0.65	+0.4
4,215,030	+		EFB2_04011	0.65	+0.6
4,215,030	+		EFB2_04011	0.65	+1.0
4,215,030	+		EFB2_04011	0.65	-1.0
4,215,030	+		EFB2_04011	0.65	-0.4
4,215,030	+		EFB2_04011	0.65	+0.8
4,215,030	+		EFB2_04011	0.65	+1.2
4,215,030	+		EFB2_04011	0.65	-1.0
4,215,031	-		EFB2_04011	0.65	-0.4
4,215,031	-		EFB2_04011	0.65	-0.1
4,215,031	-		EFB2_04011	0.65	-1.6
4,215,031	-		EFB2_04011	0.65	+0.5
4,215,031	-		EFB2_04011	0.65	+1.0
4,215,040	+		EFB2_04011	0.67	-0.7
4,215,041	-		EFB2_04011	0.67	-1.1
4,215,041	-		EFB2_04011	0.67	+0.6
4,215,043	+		EFB2_04011	0.68	-0.6
4,215,093	-		EFB2_04011	0.81	-0.8
4,215,093	-		EFB2_04011	0.81	-1.5
4,215,138	+				+0.7
4,215,138	+				-1.0
4,215,138	+				+1.8
4,215,139	-				-0.6
4,215,169	+				-0.0
4,215,169	+				-0.8
4,215,169	+				-0.5
4,215,169	+				-1.9
4,215,169	+				-2.0
4,215,169	+				-0.1
4,215,169	+				+0.1
4,215,169	+				-0.5
4,215,169	+				-2.3
4,215,169	+				+1.1
4,215,169	+				-0.1
4,215,169	+				+0.2
4,215,169	+				-0.1
4,215,169	+				-1.5
4,215,169	+				+3.2
4,215,170	-				-1.3
4,215,170	-				-0.0
4,215,170	-				+1.2
4,215,170	-				-0.5
4,215,170	-				-0.2
4,215,170	-				-0.5
4,215,170	-				+0.5
4,215,170	-				+1.8
4,215,191	+				+0.2
4,215,192	-				+1.5
4,215,203	+				+0.5
4,215,203	+				-0.8
4,215,204	-				-1.3
4,215,224	+				-0.2
4,215,224	+				-0.0
4,215,225	-				-0.9
4,215,239	+				+0.4
4,215,251	+				+0.3
4,215,252	-				+0.8
4,215,252	-				-0.2
4,215,253	+				+0.4
4,215,253	+				-0.3
4,215,253	+				+0.6
4,215,254	-				+0.3
4,215,254	-				-2.0
4,215,259	+				+2.0
4,215,259	+				-0.4
4,215,260	-				-2.0
4,215,260	-				+1.1
4,215,262	+				-1.6
4,215,262	+				+0.4
4,215,262	+				+1.3
4,215,262	+				+0.8
4,215,262	+				-1.4
4,215,262	+				+1.0
4,215,262	+				+0.2
4,215,262	+				+1.2
4,215,262	+				-0.7
4,215,262	+				+0.7
4,215,262	+				-0.4
4,215,262	+				-0.4
4,215,263	-				-1.4
4,215,263	-				-0.0
4,215,263	-				+0.2
4,215,263	-				+0.8
4,215,263	-				-0.1
4,215,263	-				+0.8
4,215,263	-				+2.5
4,215,263	-				-0.0
4,215,263	-				+0.2
4,215,263	-				-0.4
4,215,263	-				+1.4
4,215,263	-				-1.5
4,215,281	+				+0.1
4,215,281	+				-1.1
4,215,292	+				+1.4
4,215,293	-				-0.6
4,215,293	-				+0.5
4,215,293	-				-1.5
4,215,293	-				+0.8
4,215,303	+				+0.9
4,215,303	+				+0.4
4,215,303	+				-0.5
4,215,303	+				-0.5
4,215,303	+				-0.6
4,215,303	+				-1.9
4,215,303	+				-1.2
4,215,303	+				+0.5
4,215,303	+				+0.4
4,215,303	+				-0.3
4,215,303	+				-0.1
4,215,303	+				-0.4
4,215,303	+				+1.4
4,215,303	+				+0.3
4,215,303	+				+0.1
4,215,303	+				-0.1
4,215,303	+				+0.4
4,215,303	+				-0.5
4,215,303	+				-0.5
4,215,303	+				-0.5
4,215,303	+				-2.1
4,215,303	+				-1.5
4,215,303	+				+0.4
4,215,303	+				-0.1
4,215,303	+				-1.8
4,215,303	+				+2.3
4,215,304	-				+1.1
4,215,304	-				-0.3
4,215,304	-				-0.2
4,215,304	-				-0.1
4,215,304	-				+2.9
4,215,304	-				-3.1
4,215,304	-				-1.0
4,215,304	-				+0.5
4,215,304	-				-0.8
4,215,304	-				-0.9
4,215,304	-				+3.9
4,215,304	-				-0.1
4,215,304	-				+0.4
4,215,304	-				-0.6
4,215,304	-				-2.2
4,215,304	-				-0.4
4,215,304	-				-1.6
4,215,304	-				-0.4
4,215,304	-				-0.1
4,215,304	-				+0.1
4,215,304	-				+1.7
4,215,304	-				+0.3
4,215,304	-				-0.1
4,215,304	-				-0.4
4,215,317	+				+0.7
4,215,337	+				-1.3
4,215,342	-				-0.8
4,215,377	+				+1.3
4,215,377	+				-0.3
4,215,377	+				+1.1
4,215,377	+				+1.0
4,215,378	-				+1.0
4,215,378	-				+0.1
4,215,378	-				-0.8
4,215,378	-				-0.6
4,215,378	-				+0.5
4,215,378	-				+0.1
4,215,378	-				+0.8
4,215,380	+				+0.1
4,215,380	+				-0.2
4,215,380	+				+0.2
4,215,380	+				-1.8
4,215,380	+				-1.9
4,215,381	-				+0.9
4,215,381	-				-1.0
4,215,381	-				-0.0
4,215,381	-				+0.6
4,215,381	-				+0.6
4,215,381	-				-0.2
4,215,381	-				-0.5
4,215,381	-				-0.3
4,215,381	-				-0.2
4,215,384	+				+0.0
4,215,385	-				+0.8
4,215,385	-				-1.5
4,215,428	+				+0.2
4,215,428	+				+0.7
4,215,428	+				+1.3
4,215,429	-				+0.6
4,215,429	-				-0.2
4,215,429	-				+1.3
4,215,431	+				-0.9
4,215,431	+				+2.1
4,215,432	-				+0.9
4,215,432	-				-0.5
4,215,432	-				-0.4
4,215,432	-				-1.4
4,215,467	-				-2.5
4,215,533	+				-0.4
4,215,533	+				+0.7
4,215,534	-				+0.4
4,215,534	-				+0.1
4,215,534	-				-0.9
4,215,543	+				-1.5
4,215,543	+				-1.6
4,215,543	+				+0.3
4,215,543	+				+1.7
4,215,543	+				+1.1
4,215,543	+				-0.5
4,215,543	+				-0.9
4,215,544	-				+0.3
4,215,544	-				-1.8
4,215,544	-				-2.3
4,215,544	-				-1.5
4,215,544	-				-1.8
4,215,544	-				+1.3
4,215,544	-				+0.8
4,215,544	-				+0.2
4,215,544	-				+0.7
4,215,544	-				+0.9
4,215,544	-				-0.2
4,215,544	-				+1.5
4,215,544	-				+0.1
4,215,545	+				-1.2
4,215,545	+				+2.3
4,215,545	+				+1.9
4,215,545	+				-1.2
4,215,545	+				-1.7
4,215,545	+				+1.8
4,215,545	+				+0.1
4,215,545	+				+2.3
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4,215,617	+				+0.1
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4,215,617	+				+1.0
4,215,617	+				+1.9
4,215,617	+				-2.5
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4,215,621	+				-2.0
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4,215,901	+		EFB2_04012	0.15	+1.1
4,215,901	+		EFB2_04012	0.15	-0.0
4,215,901	+		EFB2_04012	0.15	-0.0
4,215,901	+		EFB2_04012	0.15	+1.4
4,215,902	-		EFB2_04012	0.15	+1.7
4,215,902	-		EFB2_04012	0.15	-0.5
4,215,902	-		EFB2_04012	0.15	+0.1
4,215,902	-		EFB2_04012	0.15	-0.9
4,215,902	-		EFB2_04012	0.15	-0.0
4,215,902	-		EFB2_04012	0.15	+2.3
4,215,902	-		EFB2_04012	0.15	+0.7
4,215,932	-		EFB2_04012	0.16	-0.5
4,215,989	+		EFB2_04012	0.17	+1.3
4,215,989	+		EFB2_04012	0.17	-0.7
4,215,989	+		EFB2_04012	0.17	+0.4
4,215,990	-		EFB2_04012	0.17	+1.0
4,215,990	-		EFB2_04012	0.17	+0.3
4,215,992	+		EFB2_04012	0.17	-1.0
4,215,992	+		EFB2_04012	0.17	-1.7
4,216,139	+		EFB2_04012	0.22	-2.6
4,216,140	-		EFB2_04012	0.22	+1.0
4,216,140	-		EFB2_04012	0.22	+0.9