Strain Fitness in Escherichia fergusonii Becca around EFB2_03641

Experiment: BHIS_CaCl2 with hk phage cocktail 1 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_03640 and EFB2_03641 are separated by 77 nucleotidesEFB2_03641 and EFB2_03642 are separated by 19 nucleotidesEFB2_03642 and EFB2_03643 are separated by 88 nucleotides EFB2_03640: EFB2_03640 - Thiamine-monophosphate kinase, at 3,806,703 to 3,807,680 _03640 EFB2_03641: EFB2_03641 - Transcription antitermination protein NusB, at 3,807,758 to 3,808,177 _03641 EFB2_03642: EFB2_03642 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,808,197 to 3,808,667 _03642 EFB2_03643: EFB2_03643 - Riboflavin biosynthesis protein RibD, at 3,808,756 to 3,809,859 _03643 Position (kb) 3807 3808 3809Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3807.335 kb on + strand, within EFB2_03640at 3807.681 kb on - strandat 3807.681 kb on - strandat 3807.745 kb on - strandat 3807.745 kb on - strandat 3807.745 kb on - strandat 3807.757 kb on - strandat 3807.757 kb on - strandat 3807.760 kb on - strandat 3807.760 kb on - strandat 3808.689 kb on - strandat 3808.719 kb on - strandat 3808.719 kb on - strandat 3808.719 kb on - strandat 3808.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS_CaCl2 with hk phage cocktail 1 MOI
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3,807,335 + EFB2_03640 0.65 +0.2
3,807,681 - +0.2
3,807,681 - -0.4
3,807,745 - -0.0
3,807,745 - +0.4
3,807,745 - -0.5
3,807,757 - +1.6
3,807,757 - -0.8
3,807,760 - +0.4
3,807,760 - -0.5
3,808,689 - -0.7
3,808,719 - -0.1
3,808,719 - -3.1
3,808,719 - +1.9
3,808,722 - -1.9

Or see this region's nucleotide sequence