Experiment: Pectic galactan from potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04967 and BACOVA_04968 overlap by 20 nucleotides BACOVA_04968 and BACOVA_04969 are separated by 102 nucleotides BACOVA_04969 and BACOVA_04970 are separated by 130 nucleotides BACOVA_04970 and BACOVA_04971 are separated by 84 nucleotides BACOVA_04971 and BACOVA_04972 are separated by 72 nucleotides
BACOVA_04967: BACOVA_04967 - hypothetical protein, at 411,059 to 414,457
_04967
BACOVA_04968: BACOVA_04968 - hypothetical protein, at 414,438 to 416,198
_04968
BACOVA_04969: BACOVA_04969 - hypothetical protein, at 416,301 to 416,405
_04969
BACOVA_04970: BACOVA_04970 - hypothetical protein, at 416,536 to 416,640
_04970
BACOVA_04971: BACOVA_04971 - hypothetical protein, at 416,725 to 416,838
_04971
BACOVA_04972: BACOVA_04972 - GDSL-like protein, at 416,911 to 418,545
_04972
Position (kb) 414
415
416
417 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 413.501 kb on - strand, within BACOVA_04967 at 413.515 kb on + strand, within BACOVA_04967 at 413.516 kb on - strand, within BACOVA_04967 at 413.516 kb on - strand, within BACOVA_04967 at 413.516 kb on - strand, within BACOVA_04967 at 413.516 kb on - strand, within BACOVA_04967 at 413.519 kb on - strand, within BACOVA_04967 at 413.532 kb on - strand, within BACOVA_04967 at 413.561 kb on - strand, within BACOVA_04967 at 413.581 kb on + strand, within BACOVA_04967 at 413.581 kb on + strand, within BACOVA_04967 at 413.581 kb on + strand, within BACOVA_04967 at 413.581 kb on + strand, within BACOVA_04967 at 413.582 kb on - strand, within BACOVA_04967 at 413.594 kb on - strand, within BACOVA_04967 at 413.612 kb on + strand, within BACOVA_04967 at 413.617 kb on + strand, within BACOVA_04967 at 413.617 kb on + strand, within BACOVA_04967 at 413.650 kb on + strand, within BACOVA_04967 at 413.655 kb on + strand, within BACOVA_04967 at 413.656 kb on - strand, within BACOVA_04967 at 413.656 kb on - strand, within BACOVA_04967 at 413.678 kb on - strand, within BACOVA_04967 at 413.721 kb on - strand, within BACOVA_04967 at 413.721 kb on - strand, within BACOVA_04967 at 413.723 kb on + strand, within BACOVA_04967 at 413.724 kb on - strand, within BACOVA_04967 at 413.728 kb on + strand, within BACOVA_04967 at 413.728 kb on + strand, within BACOVA_04967 at 413.732 kb on - strand, within BACOVA_04967 at 413.754 kb on + strand, within BACOVA_04967 at 413.789 kb on + strand, within BACOVA_04967 at 413.790 kb on - strand, within BACOVA_04967 at 413.882 kb on + strand, within BACOVA_04967 at 413.882 kb on + strand, within BACOVA_04967 at 413.920 kb on + strand, within BACOVA_04967 at 413.921 kb on - strand, within BACOVA_04967 at 413.947 kb on - strand, within BACOVA_04967 at 414.006 kb on + strand, within BACOVA_04967 at 414.075 kb on + strand, within BACOVA_04967 at 414.076 kb on - strand, within BACOVA_04967 at 414.121 kb on + strand at 414.122 kb on - strand at 414.130 kb on + strand at 414.130 kb on + strand at 414.131 kb on - strand at 414.133 kb on - strand at 414.197 kb on - strand at 414.243 kb on - strand at 414.243 kb on - strand at 414.307 kb on + strand at 414.308 kb on - strand at 414.334 kb on + strand at 414.335 kb on - strand at 414.339 kb on + strand at 414.354 kb on + strand at 414.366 kb on + strand at 414.376 kb on + strand at 414.377 kb on - strand at 414.386 kb on - strand at 414.422 kb on - strand at 414.422 kb on - strand at 414.425 kb on + strand at 414.516 kb on + strand at 414.516 kb on + strand at 414.517 kb on - strand at 414.517 kb on - strand at 414.635 kb on + strand, within BACOVA_04968 at 414.658 kb on + strand, within BACOVA_04968 at 414.659 kb on - strand, within BACOVA_04968 at 414.659 kb on - strand, within BACOVA_04968 at 414.721 kb on + strand, within BACOVA_04968 at 414.721 kb on + strand, within BACOVA_04968 at 414.810 kb on + strand, within BACOVA_04968 at 414.950 kb on - strand, within BACOVA_04968 at 414.970 kb on + strand, within BACOVA_04968 at 414.971 kb on - strand, within BACOVA_04968 at 414.993 kb on - strand, within BACOVA_04968 at 414.997 kb on - strand, within BACOVA_04968 at 414.997 kb on - strand, within BACOVA_04968 at 415.052 kb on - strand, within BACOVA_04968 at 415.052 kb on - strand, within BACOVA_04968 at 415.055 kb on - strand, within BACOVA_04968 at 415.080 kb on - strand, within BACOVA_04968 at 415.109 kb on + strand, within BACOVA_04968 at 415.113 kb on + strand, within BACOVA_04968 at 415.113 kb on + strand, within BACOVA_04968 at 415.113 kb on + strand, within BACOVA_04968 at 415.114 kb on - strand, within BACOVA_04968 at 415.114 kb on - strand, within BACOVA_04968 at 415.120 kb on - strand, within BACOVA_04968 at 415.250 kb on + strand, within BACOVA_04968 at 415.287 kb on + strand, within BACOVA_04968 at 415.287 kb on + strand, within BACOVA_04968 at 415.288 kb on - strand, within BACOVA_04968 at 415.291 kb on + strand, within BACOVA_04968 at 415.294 kb on + strand, within BACOVA_04968 at 415.297 kb on - strand, within BACOVA_04968 at 415.297 kb on - strand, within BACOVA_04968 at 415.313 kb on + strand, within BACOVA_04968 at 415.364 kb on - strand, within BACOVA_04968 at 415.383 kb on - strand, within BACOVA_04968 at 415.478 kb on + strand, within BACOVA_04968 at 415.479 kb on - strand, within BACOVA_04968 at 415.500 kb on - strand, within BACOVA_04968 at 415.512 kb on - strand, within BACOVA_04968 at 415.514 kb on + strand, within BACOVA_04968 at 415.545 kb on - strand, within BACOVA_04968 at 415.601 kb on - strand, within BACOVA_04968 at 415.609 kb on + strand, within BACOVA_04968 at 415.610 kb on - strand, within BACOVA_04968 at 415.610 kb on - strand, within BACOVA_04968 at 415.665 kb on + strand, within BACOVA_04968 at 415.676 kb on + strand, within BACOVA_04968 at 415.677 kb on - strand, within BACOVA_04968 at 415.687 kb on + strand, within BACOVA_04968 at 415.734 kb on + strand, within BACOVA_04968 at 415.740 kb on + strand, within BACOVA_04968 at 415.742 kb on + strand, within BACOVA_04968 at 415.745 kb on - strand, within BACOVA_04968 at 415.779 kb on + strand, within BACOVA_04968 at 415.780 kb on - strand, within BACOVA_04968 at 415.805 kb on - strand, within BACOVA_04968 at 415.816 kb on + strand, within BACOVA_04968 at 415.817 kb on - strand, within BACOVA_04968 at 415.817 kb on - strand, within BACOVA_04968 at 415.817 kb on - strand, within BACOVA_04968 at 415.853 kb on - strand, within BACOVA_04968 at 415.866 kb on - strand, within BACOVA_04968 at 415.866 kb on - strand, within BACOVA_04968 at 415.937 kb on + strand, within BACOVA_04968 at 415.962 kb on + strand, within BACOVA_04968 at 415.962 kb on + strand, within BACOVA_04968 at 415.981 kb on + strand, within BACOVA_04968 at 416.004 kb on + strand, within BACOVA_04968 at 416.007 kb on + strand, within BACOVA_04968 at 416.008 kb on - strand, within BACOVA_04968 at 416.018 kb on - strand, within BACOVA_04968 at 416.041 kb on - strand at 416.080 kb on + strand at 416.080 kb on + strand at 416.110 kb on + strand at 416.110 kb on + strand at 416.111 kb on - strand at 416.220 kb on - strand at 416.269 kb on + strand at 416.270 kb on - strand at 416.273 kb on - strand at 416.318 kb on + strand, within BACOVA_04969 at 416.349 kb on - strand, within BACOVA_04969 at 416.351 kb on - strand, within BACOVA_04969 at 416.360 kb on + strand, within BACOVA_04969 at 416.404 kb on - strand at 416.404 kb on - strand at 416.457 kb on + strand at 416.489 kb on + strand at 416.490 kb on - strand at 416.528 kb on + strand at 416.529 kb on - strand at 416.573 kb on + strand, within BACOVA_04970 at 416.633 kb on - strand at 416.816 kb on + strand, within BACOVA_04971 at 416.866 kb on - strand at 416.866 kb on - strand at 416.921 kb on + strand at 416.922 kb on - strand at 416.958 kb on + strand at 416.958 kb on + strand at 417.007 kb on - strand at 417.019 kb on - strand at 417.186 kb on + strand, within BACOVA_04972 at 417.193 kb on + strand, within BACOVA_04972 at 417.193 kb on + strand, within BACOVA_04972
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C) remove 413,501 - BACOVA_04967 0.72 -1.2 413,515 + BACOVA_04967 0.72 -0.1 413,516 - BACOVA_04967 0.72 -0.5 413,516 - BACOVA_04967 0.72 +0.5 413,516 - BACOVA_04967 0.72 +0.3 413,516 - BACOVA_04967 0.72 +0.1 413,519 - BACOVA_04967 0.72 -0.7 413,532 - BACOVA_04967 0.73 +0.6 413,561 - BACOVA_04967 0.74 -3.9 413,581 + BACOVA_04967 0.74 -0.4 413,581 + BACOVA_04967 0.74 -1.1 413,581 + BACOVA_04967 0.74 -0.1 413,581 + BACOVA_04967 0.74 -0.7 413,582 - BACOVA_04967 0.74 -0.3 413,594 - BACOVA_04967 0.75 -0.8 413,612 + BACOVA_04967 0.75 +0.3 413,617 + BACOVA_04967 0.75 +0.3 413,617 + BACOVA_04967 0.75 -0.0 413,650 + BACOVA_04967 0.76 -0.3 413,655 + BACOVA_04967 0.76 -0.3 413,656 - BACOVA_04967 0.76 +1.8 413,656 - BACOVA_04967 0.76 -1.0 413,678 - BACOVA_04967 0.77 +0.4 413,721 - BACOVA_04967 0.78 +0.4 413,721 - BACOVA_04967 0.78 +0.1 413,723 + BACOVA_04967 0.78 -0.1 413,724 - BACOVA_04967 0.78 -0.5 413,728 + BACOVA_04967 0.79 +0.0 413,728 + BACOVA_04967 0.79 +0.5 413,732 - BACOVA_04967 0.79 +1.0 413,754 + BACOVA_04967 0.79 -0.5 413,789 + BACOVA_04967 0.80 -0.7 413,790 - BACOVA_04967 0.80 -0.6 413,882 + BACOVA_04967 0.83 -0.2 413,882 + BACOVA_04967 0.83 -0.5 413,920 + BACOVA_04967 0.84 +0.8 413,921 - BACOVA_04967 0.84 -0.2 413,947 - BACOVA_04967 0.85 -0.2 414,006 + BACOVA_04967 0.87 -1.5 414,075 + BACOVA_04967 0.89 +0.3 414,076 - BACOVA_04967 0.89 +0.6 414,121 + +0.2 414,122 - +1.2 414,130 + +1.5 414,130 + +0.3 414,131 - +0.4 414,133 - +0.5 414,197 - +0.5 414,243 - +0.2 414,243 - -0.1 414,307 + -0.8 414,308 - -0.2 414,334 + +1.8 414,335 - +1.0 414,339 + +0.9 414,354 + -0.6 414,366 + +0.6 414,376 + +0.4 414,377 - +1.1 414,386 - +0.7 414,422 - -0.2 414,422 - -1.3 414,425 + -0.5 414,516 + -0.3 414,516 + -0.3 414,517 - -0.4 414,517 - +0.2 414,635 + BACOVA_04968 0.11 +0.2 414,658 + BACOVA_04968 0.12 +0.3 414,659 - BACOVA_04968 0.13 -0.2 414,659 - BACOVA_04968 0.13 +0.6 414,721 + BACOVA_04968 0.16 +0.8 414,721 + BACOVA_04968 0.16 -0.5 414,810 + BACOVA_04968 0.21 -0.5 414,950 - BACOVA_04968 0.29 -1.1 414,970 + BACOVA_04968 0.30 -0.1 414,971 - BACOVA_04968 0.30 -0.9 414,993 - BACOVA_04968 0.32 +0.5 414,997 - BACOVA_04968 0.32 -0.6 414,997 - BACOVA_04968 0.32 +0.2 415,052 - BACOVA_04968 0.35 -0.6 415,052 - BACOVA_04968 0.35 +0.3 415,055 - BACOVA_04968 0.35 -0.8 415,080 - BACOVA_04968 0.36 +0.8 415,109 + BACOVA_04968 0.38 -1.5 415,113 + BACOVA_04968 0.38 -2.0 415,113 + BACOVA_04968 0.38 -0.7 415,113 + BACOVA_04968 0.38 +2.4 415,114 - BACOVA_04968 0.38 -0.1 415,114 - BACOVA_04968 0.38 +0.1 415,120 - BACOVA_04968 0.39 -0.8 415,250 + BACOVA_04968 0.46 +0.3 415,287 + BACOVA_04968 0.48 -0.8 415,287 + BACOVA_04968 0.48 -1.2 415,288 - BACOVA_04968 0.48 +0.5 415,291 + BACOVA_04968 0.48 +0.5 415,294 + BACOVA_04968 0.49 -0.6 415,297 - BACOVA_04968 0.49 +0.5 415,297 - BACOVA_04968 0.49 +1.5 415,313 + BACOVA_04968 0.50 -0.8 415,364 - BACOVA_04968 0.53 -2.0 415,383 - BACOVA_04968 0.54 +0.5 415,478 + BACOVA_04968 0.59 +1.1 415,479 - BACOVA_04968 0.59 -0.7 415,500 - BACOVA_04968 0.60 +0.8 415,512 - BACOVA_04968 0.61 -0.2 415,514 + BACOVA_04968 0.61 -0.6 415,545 - BACOVA_04968 0.63 -1.3 415,601 - BACOVA_04968 0.66 -2.6 415,609 + BACOVA_04968 0.66 +0.8 415,610 - BACOVA_04968 0.67 -0.4 415,610 - BACOVA_04968 0.67 -0.1 415,665 + BACOVA_04968 0.70 -0.6 415,676 + BACOVA_04968 0.70 -1.7 415,677 - BACOVA_04968 0.70 +0.4 415,687 + BACOVA_04968 0.71 -0.7 415,734 + BACOVA_04968 0.74 +0.6 415,740 + BACOVA_04968 0.74 -0.1 415,742 + BACOVA_04968 0.74 -0.4 415,745 - BACOVA_04968 0.74 +0.5 415,779 + BACOVA_04968 0.76 -1.2 415,780 - BACOVA_04968 0.76 +0.4 415,805 - BACOVA_04968 0.78 -0.7 415,816 + BACOVA_04968 0.78 +1.4 415,817 - BACOVA_04968 0.78 +0.7 415,817 - BACOVA_04968 0.78 +0.6 415,817 - BACOVA_04968 0.78 +0.6 415,853 - BACOVA_04968 0.80 -0.2 415,866 - BACOVA_04968 0.81 +0.9 415,866 - BACOVA_04968 0.81 +1.4 415,937 + BACOVA_04968 0.85 -0.5 415,962 + BACOVA_04968 0.87 -1.1 415,962 + BACOVA_04968 0.87 -1.1 415,981 + BACOVA_04968 0.88 +1.0 416,004 + BACOVA_04968 0.89 +0.2 416,007 + BACOVA_04968 0.89 -0.3 416,008 - BACOVA_04968 0.89 +0.8 416,018 - BACOVA_04968 0.90 +0.3 416,041 - -1.7 416,080 + +0.0 416,080 + +1.1 416,110 + +0.7 416,110 + -0.9 416,111 - +0.6 416,220 - -1.1 416,269 + +0.2 416,270 - +0.9 416,273 - -0.3 416,318 + BACOVA_04969 0.16 -1.0 416,349 - BACOVA_04969 0.46 +0.4 416,351 - BACOVA_04969 0.48 +0.8 416,360 + BACOVA_04969 0.56 -0.0 416,404 - -1.8 416,404 - -0.7 416,457 + -0.3 416,489 + +0.1 416,490 - +0.7 416,528 + +0.0 416,529 - -0.2 416,573 + BACOVA_04970 0.35 +0.4 416,633 - +0.3 416,816 + BACOVA_04971 0.80 -1.0 416,866 - +0.9 416,866 - -0.9 416,921 + +0.6 416,922 - -0.3 416,958 + -0.2 416,958 + -0.2 417,007 - +0.0 417,019 - +1.1 417,186 + BACOVA_04972 0.17 -0.7 417,193 + BACOVA_04972 0.17 +0.6 417,193 + BACOVA_04972 0.17 +0.9
Or see this region's nucleotide sequence