Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04689

Experiment: Pectic galactan from potato 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04686 and BACOVA_04687 are separated by 103 nucleotidesBACOVA_04687 and BACOVA_04688 are separated by 17 nucleotidesBACOVA_04688 and BACOVA_04689 are separated by 38 nucleotidesBACOVA_04689 and BACOVA_04690 are separated by 3 nucleotidesBACOVA_04690 and BACOVA_04691 overlap by 4 nucleotidesBACOVA_04691 and BACOVA_04692 overlap by 10 nucleotides BACOVA_04686: BACOVA_04686 - hypothetical protein, at 57,215 to 57,319 _04686 BACOVA_04687: BACOVA_04687 - resolvase, N-terminal domain protein, at 57,423 to 58,034 _04687 BACOVA_04688: BACOVA_04688 - hypothetical protein, at 58,052 to 58,234 _04688 BACOVA_04689: BACOVA_04689 - hypothetical protein, at 58,273 to 59,322 _04689 BACOVA_04690: BACOVA_04690 - hypothetical protein, at 59,326 to 59,796 _04690 BACOVA_04691: BACOVA_04691 - hypothetical protein, at 59,793 to 60,194 _04691 BACOVA_04692: BACOVA_04692 - hypothetical protein, at 60,185 to 60,775 _04692 Position (kb) 58 59 60Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 57.291 kb on - strand, within BACOVA_04686at 57.291 kb on - strand, within BACOVA_04686at 57.319 kb on + strandat 57.320 kb on - strandat 57.327 kb on - strandat 57.340 kb on - strandat 57.340 kb on - strandat 57.350 kb on + strandat 57.374 kb on + strandat 57.382 kb on + strandat 57.475 kb on + strandat 57.475 kb on + strandat 57.476 kb on - strandat 57.479 kb on + strandat 57.493 kb on + strand, within BACOVA_04687at 57.494 kb on - strand, within BACOVA_04687at 57.533 kb on + strand, within BACOVA_04687at 57.547 kb on + strand, within BACOVA_04687at 57.557 kb on + strand, within BACOVA_04687at 57.559 kb on + strand, within BACOVA_04687at 57.559 kb on + strand, within BACOVA_04687at 57.560 kb on - strand, within BACOVA_04687at 57.563 kb on + strand, within BACOVA_04687at 57.564 kb on - strand, within BACOVA_04687at 57.564 kb on - strand, within BACOVA_04687at 57.626 kb on + strand, within BACOVA_04687at 57.643 kb on - strand, within BACOVA_04687at 57.708 kb on + strand, within BACOVA_04687at 57.708 kb on + strand, within BACOVA_04687at 57.708 kb on + strand, within BACOVA_04687at 57.709 kb on - strand, within BACOVA_04687at 57.709 kb on - strand, within BACOVA_04687at 57.776 kb on + strand, within BACOVA_04687at 57.777 kb on - strand, within BACOVA_04687at 57.777 kb on - strand, within BACOVA_04687at 57.798 kb on + strand, within BACOVA_04687at 57.817 kb on - strand, within BACOVA_04687at 57.949 kb on - strand, within BACOVA_04687at 57.949 kb on - strand, within BACOVA_04687at 57.949 kb on - strand, within BACOVA_04687at 57.949 kb on - strand, within BACOVA_04687at 57.949 kb on - strand, within BACOVA_04687at 57.959 kb on - strand, within BACOVA_04687at 58.015 kb on - strandat 58.040 kb on + strandat 58.041 kb on - strandat 58.047 kb on + strandat 58.048 kb on - strandat 58.070 kb on - strandat 58.240 kb on - strandat 58.323 kb on - strandat 58.417 kb on + strand, within BACOVA_04689at 58.440 kb on - strand, within BACOVA_04689at 58.440 kb on - strand, within BACOVA_04689at 58.537 kb on - strand, within BACOVA_04689at 58.640 kb on - strand, within BACOVA_04689at 58.648 kb on - strand, within BACOVA_04689at 58.648 kb on - strand, within BACOVA_04689at 58.649 kb on + strand, within BACOVA_04689at 58.649 kb on + strand, within BACOVA_04689at 58.650 kb on - strand, within BACOVA_04689at 58.650 kb on - strand, within BACOVA_04689at 58.650 kb on - strand, within BACOVA_04689at 58.650 kb on - strand, within BACOVA_04689at 58.790 kb on - strand, within BACOVA_04689at 59.015 kb on - strand, within BACOVA_04689at 59.342 kb on - strandat 59.344 kb on - strandat 59.349 kb on + strandat 59.349 kb on + strandat 59.444 kb on - strand, within BACOVA_04690at 59.453 kb on + strand, within BACOVA_04690at 59.453 kb on - strand, within BACOVA_04690at 59.453 kb on - strand, within BACOVA_04690at 59.463 kb on + strand, within BACOVA_04690at 59.509 kb on - strand, within BACOVA_04690at 59.509 kb on - strand, within BACOVA_04690at 59.551 kb on - strand, within BACOVA_04690at 59.581 kb on - strand, within BACOVA_04690at 59.593 kb on + strand, within BACOVA_04690at 59.644 kb on - strand, within BACOVA_04690at 59.657 kb on + strand, within BACOVA_04690at 59.657 kb on + strand, within BACOVA_04690at 59.680 kb on + strand, within BACOVA_04690at 59.806 kb on + strandat 59.824 kb on - strandat 59.824 kb on - strandat 59.885 kb on + strand, within BACOVA_04691at 59.885 kb on + strand, within BACOVA_04691at 59.885 kb on + strand, within BACOVA_04691at 59.963 kb on - strand, within BACOVA_04691at 59.963 kb on - strand, within BACOVA_04691at 60.041 kb on + strand, within BACOVA_04691at 60.076 kb on - strand, within BACOVA_04691at 60.180 kb on + strandat 60.185 kb on - strandat 60.185 kb on - strandat 60.222 kb on + strandat 60.281 kb on + strand, within BACOVA_04692at 60.282 kb on - strand, within BACOVA_04692at 60.320 kb on + strand, within BACOVA_04692at 60.320 kb on + strand, within BACOVA_04692at 60.321 kb on - strand, within BACOVA_04692at 60.321 kb on - strand, within BACOVA_04692at 60.321 kb on - strand, within BACOVA_04692

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C)
remove
57,291 - BACOVA_04686 0.72 +0.3
57,291 - BACOVA_04686 0.72 +0.0
57,319 + -0.4
57,320 - +1.2
57,327 - +0.2
57,340 - -0.5
57,340 - -0.4
57,350 + -0.1
57,374 + +0.5
57,382 + +0.8
57,475 + -3.0
57,475 + -1.6
57,476 - -2.5
57,479 + -3.4
57,493 + BACOVA_04687 0.11 -0.9
57,494 - BACOVA_04687 0.12 -1.8
57,533 + BACOVA_04687 0.18 -0.3
57,547 + BACOVA_04687 0.20 -2.3
57,557 + BACOVA_04687 0.22 -1.8
57,559 + BACOVA_04687 0.22 -2.2
57,559 + BACOVA_04687 0.22 -1.9
57,560 - BACOVA_04687 0.22 +1.3
57,563 + BACOVA_04687 0.23 -0.3
57,564 - BACOVA_04687 0.23 -2.2
57,564 - BACOVA_04687 0.23 -1.3
57,626 + BACOVA_04687 0.33 -1.6
57,643 - BACOVA_04687 0.36 -0.0
57,708 + BACOVA_04687 0.47 -2.3
57,708 + BACOVA_04687 0.47 -0.9
57,708 + BACOVA_04687 0.47 -2.1
57,709 - BACOVA_04687 0.47 -3.8
57,709 - BACOVA_04687 0.47 -3.3
57,776 + BACOVA_04687 0.58 -1.7
57,777 - BACOVA_04687 0.58 -3.9
57,777 - BACOVA_04687 0.58 -0.9
57,798 + BACOVA_04687 0.61 -0.7
57,817 - BACOVA_04687 0.64 -2.4
57,949 - BACOVA_04687 0.86 +0.1
57,949 - BACOVA_04687 0.86 -1.9
57,949 - BACOVA_04687 0.86 -2.7
57,949 - BACOVA_04687 0.86 -2.1
57,949 - BACOVA_04687 0.86 -1.9
57,959 - BACOVA_04687 0.88 -1.7
58,015 - -1.9
58,040 + -0.8
58,041 - -0.3
58,047 + -0.3
58,048 - -0.6
58,070 - +0.9
58,240 - -0.7
58,323 - +0.1
58,417 + BACOVA_04689 0.14 -0.2
58,440 - BACOVA_04689 0.16 -0.0
58,440 - BACOVA_04689 0.16 -0.8
58,537 - BACOVA_04689 0.25 +0.4
58,640 - BACOVA_04689 0.35 +0.2
58,648 - BACOVA_04689 0.36 -0.4
58,648 - BACOVA_04689 0.36 -0.3
58,649 + BACOVA_04689 0.36 -0.7
58,649 + BACOVA_04689 0.36 -1.7
58,650 - BACOVA_04689 0.36 -0.7
58,650 - BACOVA_04689 0.36 +0.7
58,650 - BACOVA_04689 0.36 +0.3
58,650 - BACOVA_04689 0.36 -2.0
58,790 - BACOVA_04689 0.49 +0.2
59,015 - BACOVA_04689 0.71 -0.8
59,342 - +1.3
59,344 - -0.0
59,349 + -2.5
59,349 + -1.5
59,444 - BACOVA_04690 0.25 +1.3
59,453 + BACOVA_04690 0.27 +0.4
59,453 - BACOVA_04690 0.27 +0.3
59,453 - BACOVA_04690 0.27 +0.1
59,463 + BACOVA_04690 0.29 +0.4
59,509 - BACOVA_04690 0.39 -1.8
59,509 - BACOVA_04690 0.39 +0.1
59,551 - BACOVA_04690 0.48 +0.4
59,581 - BACOVA_04690 0.54 -0.5
59,593 + BACOVA_04690 0.57 -0.8
59,644 - BACOVA_04690 0.68 +0.6
59,657 + BACOVA_04690 0.70 +1.1
59,657 + BACOVA_04690 0.70 -0.5
59,680 + BACOVA_04690 0.75 +0.0
59,806 + -0.6
59,824 - +1.3
59,824 - +0.4
59,885 + BACOVA_04691 0.23 +1.1
59,885 + BACOVA_04691 0.23 +0.1
59,885 + BACOVA_04691 0.23 +0.3
59,963 - BACOVA_04691 0.42 -0.6
59,963 - BACOVA_04691 0.42 -0.1
60,041 + BACOVA_04691 0.62 +0.7
60,076 - BACOVA_04691 0.70 -1.5
60,180 + -0.5
60,185 - -2.0
60,185 - +0.1
60,222 + +0.3
60,281 + BACOVA_04692 0.16 -0.9
60,282 - BACOVA_04692 0.16 -0.8
60,320 + BACOVA_04692 0.23 -0.2
60,320 + BACOVA_04692 0.23 +0.2
60,321 - BACOVA_04692 0.23 -1.2
60,321 - BACOVA_04692 0.23 +0.5
60,321 - BACOVA_04692 0.23 -0.2

Or see this region's nucleotide sequence