Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03818

Experiment: Pectic galactan from potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03817 and BACOVA_03818 are separated by 47 nucleotidesBACOVA_03818 and BACOVA_03819 are separated by 80 nucleotidesBACOVA_03819 and BACOVA_03820 are separated by 18 nucleotides BACOVA_03817: BACOVA_03817 - TrkA C-terminal domain protein, at 163,136 to 164,734 _03817 BACOVA_03818: BACOVA_03818 - cation diffusion facilitator family transporter, at 164,782 to 165,684 _03818 BACOVA_03819: BACOVA_03819 - thioesterase family protein, at 165,765 to 166,145 _03819 BACOVA_03820: BACOVA_03820 - hypothetical protein, at 166,164 to 167,045 _03820 Position (kb) 164 165 166Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 163.870 kb on + strand, within BACOVA_03817at 163.874 kb on + strand, within BACOVA_03817at 163.952 kb on - strand, within BACOVA_03817at 163.994 kb on + strand, within BACOVA_03817at 164.003 kb on + strand, within BACOVA_03817at 164.004 kb on - strand, within BACOVA_03817at 164.008 kb on - strand, within BACOVA_03817at 164.030 kb on - strand, within BACOVA_03817at 164.039 kb on - strand, within BACOVA_03817at 164.039 kb on - strand, within BACOVA_03817at 164.045 kb on - strand, within BACOVA_03817at 164.045 kb on - strand, within BACOVA_03817at 164.119 kb on + strand, within BACOVA_03817at 164.193 kb on - strand, within BACOVA_03817at 164.299 kb on - strand, within BACOVA_03817at 164.327 kb on - strand, within BACOVA_03817at 164.389 kb on + strand, within BACOVA_03817at 164.398 kb on + strand, within BACOVA_03817at 164.454 kb on - strand, within BACOVA_03817at 164.461 kb on + strand, within BACOVA_03817at 164.567 kb on + strand, within BACOVA_03817at 164.568 kb on - strand, within BACOVA_03817at 164.642 kb on + strandat 164.720 kb on + strandat 164.741 kb on - strandat 164.748 kb on - strandat 164.752 kb on - strandat 164.770 kb on + strandat 164.877 kb on + strand, within BACOVA_03818at 164.878 kb on - strand, within BACOVA_03818at 164.878 kb on - strand, within BACOVA_03818at 164.878 kb on - strand, within BACOVA_03818at 164.908 kb on - strand, within BACOVA_03818at 164.910 kb on + strand, within BACOVA_03818at 164.964 kb on + strand, within BACOVA_03818at 165.017 kb on - strand, within BACOVA_03818at 165.017 kb on - strand, within BACOVA_03818at 165.099 kb on + strand, within BACOVA_03818at 165.102 kb on + strand, within BACOVA_03818at 165.102 kb on + strand, within BACOVA_03818at 165.103 kb on - strand, within BACOVA_03818at 165.154 kb on - strand, within BACOVA_03818at 165.154 kb on - strand, within BACOVA_03818at 165.155 kb on + strand, within BACOVA_03818at 165.155 kb on + strand, within BACOVA_03818at 165.156 kb on - strand, within BACOVA_03818at 165.156 kb on - strand, within BACOVA_03818at 165.156 kb on - strand, within BACOVA_03818at 165.159 kb on + strand, within BACOVA_03818at 165.159 kb on + strand, within BACOVA_03818at 165.160 kb on - strand, within BACOVA_03818at 165.160 kb on - strand, within BACOVA_03818at 165.162 kb on + strand, within BACOVA_03818at 165.165 kb on + strand, within BACOVA_03818at 165.202 kb on - strand, within BACOVA_03818at 165.202 kb on - strand, within BACOVA_03818at 165.222 kb on - strand, within BACOVA_03818at 165.246 kb on + strand, within BACOVA_03818at 165.349 kb on + strand, within BACOVA_03818at 165.349 kb on + strand, within BACOVA_03818at 165.358 kb on + strand, within BACOVA_03818at 165.375 kb on + strand, within BACOVA_03818at 165.400 kb on - strand, within BACOVA_03818at 165.409 kb on + strand, within BACOVA_03818at 165.429 kb on + strand, within BACOVA_03818at 165.429 kb on + strand, within BACOVA_03818at 165.429 kb on + strand, within BACOVA_03818at 165.430 kb on - strand, within BACOVA_03818at 165.438 kb on + strand, within BACOVA_03818at 165.446 kb on + strand, within BACOVA_03818at 165.460 kb on - strand, within BACOVA_03818at 165.503 kb on - strand, within BACOVA_03818at 165.514 kb on + strand, within BACOVA_03818at 165.547 kb on + strand, within BACOVA_03818at 165.564 kb on - strand, within BACOVA_03818at 165.586 kb on + strand, within BACOVA_03818at 165.602 kb on - strandat 165.619 kb on + strandat 165.624 kb on + strandat 165.657 kb on + strandat 165.689 kb on + strandat 165.697 kb on + strandat 165.697 kb on + strandat 165.698 kb on - strandat 165.698 kb on - strandat 165.702 kb on + strandat 165.711 kb on + strandat 165.736 kb on + strandat 165.812 kb on - strand, within BACOVA_03819at 165.816 kb on + strand, within BACOVA_03819at 165.816 kb on + strand, within BACOVA_03819at 165.816 kb on + strand, within BACOVA_03819at 165.817 kb on - strand, within BACOVA_03819at 165.817 kb on - strand, within BACOVA_03819at 165.817 kb on - strand, within BACOVA_03819at 165.819 kb on - strand, within BACOVA_03819at 165.858 kb on + strand, within BACOVA_03819at 165.874 kb on - strand, within BACOVA_03819at 165.909 kb on + strand, within BACOVA_03819at 165.951 kb on - strand, within BACOVA_03819at 165.977 kb on + strand, within BACOVA_03819at 165.978 kb on - strand, within BACOVA_03819at 166.120 kb on - strandat 166.122 kb on - strandat 166.146 kb on - strandat 166.159 kb on - strandat 166.160 kb on + strandat 166.170 kb on - strandat 166.170 kb on - strandat 166.175 kb on + strandat 166.241 kb on + strandat 166.241 kb on + strandat 166.242 kb on - strandat 166.256 kb on + strand, within BACOVA_03820at 166.256 kb on + strand, within BACOVA_03820at 166.256 kb on + strand, within BACOVA_03820at 166.257 kb on - strand, within BACOVA_03820at 166.259 kb on - strand, within BACOVA_03820at 166.292 kb on + strand, within BACOVA_03820at 166.308 kb on + strand, within BACOVA_03820at 166.314 kb on + strand, within BACOVA_03820at 166.332 kb on + strand, within BACOVA_03820at 166.332 kb on + strand, within BACOVA_03820at 166.336 kb on - strand, within BACOVA_03820at 166.341 kb on - strand, within BACOVA_03820at 166.435 kb on - strand, within BACOVA_03820at 166.498 kb on + strand, within BACOVA_03820at 166.547 kb on + strand, within BACOVA_03820at 166.570 kb on - strand, within BACOVA_03820at 166.583 kb on + strand, within BACOVA_03820at 166.613 kb on - strand, within BACOVA_03820at 166.617 kb on - strand, within BACOVA_03820at 166.640 kb on + strand, within BACOVA_03820at 166.652 kb on - strand, within BACOVA_03820

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C)
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163,870 + BACOVA_03817 0.46 -1.1
163,874 + BACOVA_03817 0.46 +0.8
163,952 - BACOVA_03817 0.51 -0.9
163,994 + BACOVA_03817 0.54 +0.4
164,003 + BACOVA_03817 0.54 +0.0
164,004 - BACOVA_03817 0.54 -1.1
164,008 - BACOVA_03817 0.55 +0.0
164,030 - BACOVA_03817 0.56 -0.1
164,039 - BACOVA_03817 0.56 -0.4
164,039 - BACOVA_03817 0.56 -0.2
164,045 - BACOVA_03817 0.57 -1.7
164,045 - BACOVA_03817 0.57 +1.3
164,119 + BACOVA_03817 0.61 -2.0
164,193 - BACOVA_03817 0.66 -0.8
164,299 - BACOVA_03817 0.73 +0.5
164,327 - BACOVA_03817 0.74 +0.6
164,389 + BACOVA_03817 0.78 -0.5
164,398 + BACOVA_03817 0.79 +1.0
164,454 - BACOVA_03817 0.82 +0.1
164,461 + BACOVA_03817 0.83 -0.1
164,567 + BACOVA_03817 0.89 +0.6
164,568 - BACOVA_03817 0.90 +0.8
164,642 + -1.4
164,720 + -1.8
164,741 - +1.0
164,748 - +1.4
164,752 - -0.9
164,770 + -1.3
164,877 + BACOVA_03818 0.11 +1.6
164,878 - BACOVA_03818 0.11 -1.3
164,878 - BACOVA_03818 0.11 +0.4
164,878 - BACOVA_03818 0.11 +0.8
164,908 - BACOVA_03818 0.14 -1.3
164,910 + BACOVA_03818 0.14 +0.5
164,964 + BACOVA_03818 0.20 +0.5
165,017 - BACOVA_03818 0.26 +0.6
165,017 - BACOVA_03818 0.26 -0.3
165,099 + BACOVA_03818 0.35 -0.5
165,102 + BACOVA_03818 0.35 +1.0
165,102 + BACOVA_03818 0.35 +0.7
165,103 - BACOVA_03818 0.36 -0.5
165,154 - BACOVA_03818 0.41 -0.6
165,154 - BACOVA_03818 0.41 +1.0
165,155 + BACOVA_03818 0.41 -0.5
165,155 + BACOVA_03818 0.41 +0.2
165,156 - BACOVA_03818 0.41 +0.2
165,156 - BACOVA_03818 0.41 -1.3
165,156 - BACOVA_03818 0.41 +0.0
165,159 + BACOVA_03818 0.42 -1.3
165,159 + BACOVA_03818 0.42 -0.6
165,160 - BACOVA_03818 0.42 -0.8
165,160 - BACOVA_03818 0.42 -0.3
165,162 + BACOVA_03818 0.42 +1.5
165,165 + BACOVA_03818 0.42 +0.8
165,202 - BACOVA_03818 0.47 -0.4
165,202 - BACOVA_03818 0.47 +0.2
165,222 - BACOVA_03818 0.49 -0.3
165,246 + BACOVA_03818 0.51 -0.1
165,349 + BACOVA_03818 0.63 +1.5
165,349 + BACOVA_03818 0.63 +0.3
165,358 + BACOVA_03818 0.64 +0.0
165,375 + BACOVA_03818 0.66 -0.7
165,400 - BACOVA_03818 0.68 +1.0
165,409 + BACOVA_03818 0.69 -1.9
165,429 + BACOVA_03818 0.72 +0.5
165,429 + BACOVA_03818 0.72 +1.3
165,429 + BACOVA_03818 0.72 -1.1
165,430 - BACOVA_03818 0.72 +0.4
165,438 + BACOVA_03818 0.73 -0.1
165,446 + BACOVA_03818 0.74 -0.8
165,460 - BACOVA_03818 0.75 +0.4
165,503 - BACOVA_03818 0.80 -0.1
165,514 + BACOVA_03818 0.81 +0.0
165,547 + BACOVA_03818 0.85 +0.8
165,564 - BACOVA_03818 0.87 +0.5
165,586 + BACOVA_03818 0.89 +0.3
165,602 - +0.2
165,619 + +0.2
165,624 + +0.7
165,657 + -0.3
165,689 + -0.6
165,697 + +0.5
165,697 + -3.2
165,698 - -1.8
165,698 - -1.0
165,702 + -1.3
165,711 + +1.1
165,736 + +0.9
165,812 - BACOVA_03819 0.12 +0.4
165,816 + BACOVA_03819 0.13 -1.0
165,816 + BACOVA_03819 0.13 -0.4
165,816 + BACOVA_03819 0.13 +0.2
165,817 - BACOVA_03819 0.14 -0.3
165,817 - BACOVA_03819 0.14 -0.9
165,817 - BACOVA_03819 0.14 -0.8
165,819 - BACOVA_03819 0.14 +0.6
165,858 + BACOVA_03819 0.24 -0.4
165,874 - BACOVA_03819 0.29 -2.6
165,909 + BACOVA_03819 0.38 +0.1
165,951 - BACOVA_03819 0.49 -1.0
165,977 + BACOVA_03819 0.56 -1.8
165,978 - BACOVA_03819 0.56 -0.7
166,120 - -0.8
166,122 - -0.8
166,146 - +0.9
166,159 - -1.0
166,160 + -1.0
166,170 - -1.4
166,170 - -0.1
166,175 + -0.2
166,241 + +0.2
166,241 + +0.7
166,242 - -0.8
166,256 + BACOVA_03820 0.10 -0.8
166,256 + BACOVA_03820 0.10 -1.0
166,256 + BACOVA_03820 0.10 -0.9
166,257 - BACOVA_03820 0.11 -1.0
166,259 - BACOVA_03820 0.11 +1.3
166,292 + BACOVA_03820 0.15 +0.7
166,308 + BACOVA_03820 0.16 -0.9
166,314 + BACOVA_03820 0.17 +1.2
166,332 + BACOVA_03820 0.19 -1.3
166,332 + BACOVA_03820 0.19 +2.0
166,336 - BACOVA_03820 0.20 +1.0
166,341 - BACOVA_03820 0.20 -0.3
166,435 - BACOVA_03820 0.31 -0.4
166,498 + BACOVA_03820 0.38 -2.6
166,547 + BACOVA_03820 0.43 -0.8
166,570 - BACOVA_03820 0.46 +0.0
166,583 + BACOVA_03820 0.48 +0.7
166,613 - BACOVA_03820 0.51 +0.2
166,617 - BACOVA_03820 0.51 -0.5
166,640 + BACOVA_03820 0.54 -0.2
166,652 - BACOVA_03820 0.55 -0.1

Or see this region's nucleotide sequence