Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03445

Experiment: Pectic galactan from potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03444 and BACOVA_03445 overlap by 17 nucleotidesBACOVA_03445 and BACOVA_03446 are separated by 25 nucleotides BACOVA_03444: BACOVA_03444 - SusD family protein, at 183,110 to 184,966 _03444 BACOVA_03445: BACOVA_03445 - IPT/TIG domain protein, at 184,950 to 186,332 _03445 BACOVA_03446: BACOVA_03446 - hypothetical protein, at 186,358 to 188,361 _03446 Position (kb) 184 185 186 187Strain fitness (log2 ratio) -2 -1 0 1 2at 183.982 kb on - strand, within BACOVA_03444at 184.030 kb on + strand, within BACOVA_03444at 184.088 kb on + strand, within BACOVA_03444at 184.088 kb on + strand, within BACOVA_03444at 184.089 kb on - strand, within BACOVA_03444at 184.091 kb on - strand, within BACOVA_03444at 184.091 kb on - strand, within BACOVA_03444at 184.091 kb on - strand, within BACOVA_03444at 184.101 kb on - strand, within BACOVA_03444at 184.101 kb on - strand, within BACOVA_03444at 184.101 kb on - strand, within BACOVA_03444at 184.101 kb on - strand, within BACOVA_03444at 184.104 kb on + strand, within BACOVA_03444at 184.104 kb on + strand, within BACOVA_03444at 184.105 kb on - strand, within BACOVA_03444at 184.109 kb on + strand, within BACOVA_03444at 184.109 kb on + strand, within BACOVA_03444at 184.110 kb on - strand, within BACOVA_03444at 184.110 kb on - strand, within BACOVA_03444at 184.123 kb on + strand, within BACOVA_03444at 184.132 kb on + strand, within BACOVA_03444at 184.162 kb on + strand, within BACOVA_03444at 184.188 kb on - strand, within BACOVA_03444at 184.193 kb on + strand, within BACOVA_03444at 184.238 kb on - strand, within BACOVA_03444at 184.299 kb on + strand, within BACOVA_03444at 184.324 kb on + strand, within BACOVA_03444at 184.394 kb on + strand, within BACOVA_03444at 184.395 kb on - strand, within BACOVA_03444at 184.395 kb on - strand, within BACOVA_03444at 184.395 kb on - strand, within BACOVA_03444at 184.512 kb on - strand, within BACOVA_03444at 184.514 kb on + strand, within BACOVA_03444at 184.514 kb on + strand, within BACOVA_03444at 184.563 kb on + strand, within BACOVA_03444at 184.564 kb on - strand, within BACOVA_03444at 184.595 kb on - strand, within BACOVA_03444at 184.595 kb on - strand, within BACOVA_03444at 184.642 kb on + strand, within BACOVA_03444at 184.664 kb on - strand, within BACOVA_03444at 184.724 kb on + strand, within BACOVA_03444at 184.724 kb on + strand, within BACOVA_03444at 184.724 kb on + strand, within BACOVA_03444at 184.730 kb on + strand, within BACOVA_03444at 184.730 kb on + strand, within BACOVA_03444at 184.730 kb on + strand, within BACOVA_03444at 184.730 kb on + strand, within BACOVA_03444at 184.738 kb on + strand, within BACOVA_03444at 184.738 kb on + strand, within BACOVA_03444at 184.739 kb on - strand, within BACOVA_03444at 184.851 kb on - strandat 184.876 kb on + strandat 184.877 kb on - strandat 184.881 kb on + strandat 184.881 kb on + strandat 184.881 kb on + strandat 184.882 kb on - strandat 184.882 kb on - strandat 184.933 kb on + strandat 184.934 kb on - strandat 184.964 kb on + strandat 184.973 kb on + strandat 184.973 kb on + strandat 184.977 kb on - strandat 184.991 kb on + strandat 184.991 kb on + strandat 184.992 kb on - strandat 184.999 kb on + strandat 185.083 kb on + strandat 185.084 kb on - strandat 185.086 kb on - strandat 185.086 kb on - strandat 185.102 kb on + strand, within BACOVA_03445at 185.102 kb on + strand, within BACOVA_03445at 185.103 kb on - strand, within BACOVA_03445at 185.128 kb on + strand, within BACOVA_03445at 185.128 kb on + strand, within BACOVA_03445at 185.193 kb on - strand, within BACOVA_03445at 185.197 kb on - strand, within BACOVA_03445at 185.231 kb on + strand, within BACOVA_03445at 185.236 kb on - strand, within BACOVA_03445at 185.261 kb on + strand, within BACOVA_03445at 185.266 kb on + strand, within BACOVA_03445at 185.267 kb on - strand, within BACOVA_03445at 185.296 kb on + strand, within BACOVA_03445at 185.319 kb on - strand, within BACOVA_03445at 185.353 kb on + strand, within BACOVA_03445at 185.354 kb on - strand, within BACOVA_03445at 185.355 kb on + strand, within BACOVA_03445at 185.396 kb on + strand, within BACOVA_03445at 185.410 kb on - strand, within BACOVA_03445at 185.446 kb on + strand, within BACOVA_03445at 185.446 kb on + strand, within BACOVA_03445at 185.455 kb on - strand, within BACOVA_03445at 185.517 kb on + strand, within BACOVA_03445at 185.517 kb on + strand, within BACOVA_03445at 185.538 kb on - strand, within BACOVA_03445at 185.643 kb on + strand, within BACOVA_03445at 185.658 kb on + strand, within BACOVA_03445at 185.661 kb on - strand, within BACOVA_03445at 185.661 kb on - strand, within BACOVA_03445at 185.718 kb on + strand, within BACOVA_03445at 185.718 kb on + strand, within BACOVA_03445at 185.718 kb on + strand, within BACOVA_03445at 185.719 kb on - strand, within BACOVA_03445at 185.763 kb on + strand, within BACOVA_03445at 185.815 kb on - strand, within BACOVA_03445at 185.816 kb on + strand, within BACOVA_03445at 185.817 kb on - strand, within BACOVA_03445at 185.826 kb on - strand, within BACOVA_03445at 185.870 kb on + strand, within BACOVA_03445at 185.914 kb on + strand, within BACOVA_03445at 186.101 kb on + strand, within BACOVA_03445at 186.102 kb on - strand, within BACOVA_03445at 186.109 kb on - strand, within BACOVA_03445at 186.148 kb on + strand, within BACOVA_03445at 186.149 kb on - strand, within BACOVA_03445at 186.152 kb on + strand, within BACOVA_03445at 186.152 kb on + strand, within BACOVA_03445at 186.152 kb on + strand, within BACOVA_03445at 186.153 kb on - strand, within BACOVA_03445at 186.153 kb on - strand, within BACOVA_03445at 186.153 kb on - strand, within BACOVA_03445at 186.153 kb on - strand, within BACOVA_03445at 186.153 kb on - strand, within BACOVA_03445at 186.160 kb on - strand, within BACOVA_03445at 186.221 kb on + strandat 186.336 kb on - strandat 186.358 kb on - strandat 186.378 kb on - strandat 186.455 kb on + strandat 186.456 kb on - strandat 186.456 kb on - strandat 186.474 kb on + strandat 186.475 kb on - strandat 186.488 kb on + strandat 186.541 kb on - strandat 186.577 kb on - strand, within BACOVA_03446at 186.579 kb on + strand, within BACOVA_03446at 186.604 kb on + strand, within BACOVA_03446at 186.654 kb on - strand, within BACOVA_03446at 186.680 kb on + strand, within BACOVA_03446at 186.681 kb on - strand, within BACOVA_03446at 186.697 kb on - strand, within BACOVA_03446at 186.733 kb on - strand, within BACOVA_03446at 186.754 kb on - strand, within BACOVA_03446at 186.857 kb on + strand, within BACOVA_03446at 186.864 kb on + strand, within BACOVA_03446at 186.869 kb on + strand, within BACOVA_03446at 186.870 kb on - strand, within BACOVA_03446at 186.874 kb on - strand, within BACOVA_03446at 186.910 kb on + strand, within BACOVA_03446at 186.912 kb on + strand, within BACOVA_03446at 186.912 kb on + strand, within BACOVA_03446at 186.913 kb on - strand, within BACOVA_03446at 186.915 kb on + strand, within BACOVA_03446at 186.916 kb on - strand, within BACOVA_03446at 186.921 kb on + strand, within BACOVA_03446at 187.060 kb on + strand, within BACOVA_03446at 187.061 kb on - strand, within BACOVA_03446at 187.134 kb on + strand, within BACOVA_03446at 187.186 kb on + strand, within BACOVA_03446at 187.215 kb on + strand, within BACOVA_03446at 187.257 kb on + strand, within BACOVA_03446at 187.258 kb on - strand, within BACOVA_03446at 187.258 kb on - strand, within BACOVA_03446at 187.258 kb on - strand, within BACOVA_03446at 187.331 kb on - strand, within BACOVA_03446

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C)
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183,982 - BACOVA_03444 0.47 -0.7
184,030 + BACOVA_03444 0.50 -1.0
184,088 + BACOVA_03444 0.53 -1.1
184,088 + BACOVA_03444 0.53 -0.7
184,089 - BACOVA_03444 0.53 -1.4
184,091 - BACOVA_03444 0.53 -0.3
184,091 - BACOVA_03444 0.53 +0.8
184,091 - BACOVA_03444 0.53 -0.5
184,101 - BACOVA_03444 0.53 -0.9
184,101 - BACOVA_03444 0.53 +0.3
184,101 - BACOVA_03444 0.53 -0.7
184,101 - BACOVA_03444 0.53 +0.2
184,104 + BACOVA_03444 0.54 +0.7
184,104 + BACOVA_03444 0.54 -0.2
184,105 - BACOVA_03444 0.54 -0.0
184,109 + BACOVA_03444 0.54 -0.4
184,109 + BACOVA_03444 0.54 -0.1
184,110 - BACOVA_03444 0.54 -1.9
184,110 - BACOVA_03444 0.54 -0.4
184,123 + BACOVA_03444 0.55 +1.3
184,132 + BACOVA_03444 0.55 +0.0
184,162 + BACOVA_03444 0.57 -0.7
184,188 - BACOVA_03444 0.58 +0.3
184,193 + BACOVA_03444 0.58 -0.4
184,238 - BACOVA_03444 0.61 -2.4
184,299 + BACOVA_03444 0.64 -0.6
184,324 + BACOVA_03444 0.65 +1.1
184,394 + BACOVA_03444 0.69 +0.0
184,395 - BACOVA_03444 0.69 +1.3
184,395 - BACOVA_03444 0.69 +0.7
184,395 - BACOVA_03444 0.69 +0.7
184,512 - BACOVA_03444 0.75 -1.0
184,514 + BACOVA_03444 0.76 +0.2
184,514 + BACOVA_03444 0.76 +1.4
184,563 + BACOVA_03444 0.78 +0.6
184,564 - BACOVA_03444 0.78 +0.0
184,595 - BACOVA_03444 0.80 +0.4
184,595 - BACOVA_03444 0.80 -1.2
184,642 + BACOVA_03444 0.82 +0.5
184,664 - BACOVA_03444 0.84 +1.2
184,724 + BACOVA_03444 0.87 +0.9
184,724 + BACOVA_03444 0.87 -0.4
184,724 + BACOVA_03444 0.87 -0.4
184,730 + BACOVA_03444 0.87 +0.9
184,730 + BACOVA_03444 0.87 -0.4
184,730 + BACOVA_03444 0.87 +0.1
184,730 + BACOVA_03444 0.87 +0.1
184,738 + BACOVA_03444 0.88 +0.1
184,738 + BACOVA_03444 0.88 +0.9
184,739 - BACOVA_03444 0.88 +0.4
184,851 - -0.2
184,876 + +0.4
184,877 - +0.2
184,881 + +1.7
184,881 + +0.7
184,881 + -1.5
184,882 - +0.5
184,882 - -0.3
184,933 + -0.9
184,934 - +0.6
184,964 + +0.1
184,973 + -0.1
184,973 + -0.9
184,977 - -0.9
184,991 + +0.0
184,991 + -0.6
184,992 - -0.3
184,999 + +0.5
185,083 + -1.5
185,084 - +0.6
185,086 - +0.2
185,086 - +0.3
185,102 + BACOVA_03445 0.11 -0.6
185,102 + BACOVA_03445 0.11 +0.9
185,103 - BACOVA_03445 0.11 +0.3
185,128 + BACOVA_03445 0.13 +0.5
185,128 + BACOVA_03445 0.13 +0.8
185,193 - BACOVA_03445 0.18 -1.2
185,197 - BACOVA_03445 0.18 -1.2
185,231 + BACOVA_03445 0.20 -0.2
185,236 - BACOVA_03445 0.21 -0.4
185,261 + BACOVA_03445 0.22 -0.6
185,266 + BACOVA_03445 0.23 +0.1
185,267 - BACOVA_03445 0.23 +1.1
185,296 + BACOVA_03445 0.25 +0.8
185,319 - BACOVA_03445 0.27 +1.1
185,353 + BACOVA_03445 0.29 +0.2
185,354 - BACOVA_03445 0.29 +0.6
185,355 + BACOVA_03445 0.29 +0.6
185,396 + BACOVA_03445 0.32 -0.3
185,410 - BACOVA_03445 0.33 +1.2
185,446 + BACOVA_03445 0.36 +1.0
185,446 + BACOVA_03445 0.36 -2.5
185,455 - BACOVA_03445 0.37 +0.6
185,517 + BACOVA_03445 0.41 -0.4
185,517 + BACOVA_03445 0.41 +1.2
185,538 - BACOVA_03445 0.43 +0.3
185,643 + BACOVA_03445 0.50 -0.4
185,658 + BACOVA_03445 0.51 +0.3
185,661 - BACOVA_03445 0.51 +0.4
185,661 - BACOVA_03445 0.51 +1.0
185,718 + BACOVA_03445 0.56 -0.4
185,718 + BACOVA_03445 0.56 +0.5
185,718 + BACOVA_03445 0.56 -0.3
185,719 - BACOVA_03445 0.56 -2.2
185,763 + BACOVA_03445 0.59 -0.1
185,815 - BACOVA_03445 0.63 -0.9
185,816 + BACOVA_03445 0.63 +0.7
185,817 - BACOVA_03445 0.63 -0.2
185,826 - BACOVA_03445 0.63 +0.5
185,870 + BACOVA_03445 0.67 -0.7
185,914 + BACOVA_03445 0.70 +2.3
186,101 + BACOVA_03445 0.83 -0.0
186,102 - BACOVA_03445 0.83 -0.6
186,109 - BACOVA_03445 0.84 +0.9
186,148 + BACOVA_03445 0.87 +0.2
186,149 - BACOVA_03445 0.87 +0.6
186,152 + BACOVA_03445 0.87 -0.5
186,152 + BACOVA_03445 0.87 +0.4
186,152 + BACOVA_03445 0.87 +0.9
186,153 - BACOVA_03445 0.87 -0.8
186,153 - BACOVA_03445 0.87 -0.5
186,153 - BACOVA_03445 0.87 -0.3
186,153 - BACOVA_03445 0.87 -0.8
186,153 - BACOVA_03445 0.87 -1.2
186,160 - BACOVA_03445 0.87 +0.6
186,221 + -0.7
186,336 - -0.4
186,358 - -0.5
186,378 - +0.6
186,455 + -0.1
186,456 - +0.7
186,456 - +0.1
186,474 + +0.4
186,475 - -0.7
186,488 + +0.7
186,541 - +0.2
186,577 - BACOVA_03446 0.11 +0.2
186,579 + BACOVA_03446 0.11 -0.7
186,604 + BACOVA_03446 0.12 +1.9
186,654 - BACOVA_03446 0.15 +0.7
186,680 + BACOVA_03446 0.16 +0.7
186,681 - BACOVA_03446 0.16 -0.1
186,697 - BACOVA_03446 0.17 +1.4
186,733 - BACOVA_03446 0.19 +0.1
186,754 - BACOVA_03446 0.20 +0.6
186,857 + BACOVA_03446 0.25 +1.1
186,864 + BACOVA_03446 0.25 +0.0
186,869 + BACOVA_03446 0.25 -1.3
186,870 - BACOVA_03446 0.26 -0.3
186,874 - BACOVA_03446 0.26 +0.0
186,910 + BACOVA_03446 0.28 -0.4
186,912 + BACOVA_03446 0.28 +0.5
186,912 + BACOVA_03446 0.28 +0.3
186,913 - BACOVA_03446 0.28 +0.1
186,915 + BACOVA_03446 0.28 +0.8
186,916 - BACOVA_03446 0.28 -0.3
186,921 + BACOVA_03446 0.28 +0.8
187,060 + BACOVA_03446 0.35 +0.3
187,061 - BACOVA_03446 0.35 +0.6
187,134 + BACOVA_03446 0.39 -0.1
187,186 + BACOVA_03446 0.41 -0.4
187,215 + BACOVA_03446 0.43 +0.6
187,257 + BACOVA_03446 0.45 -0.2
187,258 - BACOVA_03446 0.45 +0.4
187,258 - BACOVA_03446 0.45 +0.6
187,258 - BACOVA_03446 0.45 -0.4
187,331 - BACOVA_03446 0.49 +0.7

Or see this region's nucleotide sequence